LOCUS AB795032 1500 bp RNA linear VRL 27-SEP-2013
DEFINITION Japanese encephalitis virus E gene for envelope protein, partial
cds, strain: JEV/Bo/Miyazaki/1/2009.
ACCESSION AB795032
VERSION AB795032.1
KEYWORDS .
SOURCE Japanese encephalitis virus
ORGANISM Japanese encephalitis virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota;
Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus;
Orthoflavivirus japonicum.
REFERENCE 1 (bases 1 to 1500)
AUTHORS Yamakawa,M. and Shirafuji,H.
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hiroaki Shirafuji
National Institute of Animal Health, Kyushu Research Station; 2702
Chuzan, Kagoshima, Kagoshima 891-0105, Japan
URL :http://www.naro.affrc.go.jp/niah/index.html
REFERENCE 2
AUTHORS Katayama,T., Saito,S., Horiuchi,S., Maruta,T., Kato,T., Yanase,T.,
Yamakawa,M. and Shirafuji,H.
TITLE Nonsuppurative Encephalomyelitis in a Calf in Japan and Isolation
of Japanese Encephalitis Virus Genotype 1 from the Affected Calf
JOURNAL J. Clin. Microbiol. 51, 3448-3453 (2013)
REMARK DOI:10.1128/JCM.00737-13
COMMENT
FEATURES Location/Qualifiers
source 1..1500
/collection_date="2009"
/country="Japan:Miyazaki"
/db_xref="taxon:11072"
/host="Bos taurus"
/mol_type="genomic RNA"
/organism="Japanese encephalitis virus"
/strain="JEV/Bo/Miyazaki/1/2009"
CDS <1..>1500
/codon_start=1
/gene="E"
/product="envelope protein"
/protein_id="BAM94438.1"
/transl_table=1
/translation="FNCLGMGNRDFIEGASGATWVDLVLEGDSCLTIMANDKPTLDVR
MINIEASQLAEVRSYCYHASVTDISTVARCPTTGEAHNEKRADSSYVCKQGFTDRGWG
NGCGLFGKGSIDTCAKFSCTNKAIGRMIQPENIKYEVGIFVHGTTTSENHGNYSAQVG
ASQAAKFTVTPNAPSITLKLGDYGEVTLDCEPRSGLNTEAFYVMTVGSKSFLVHREWF
HDLSLPWTSPSSTAWRNRELLMEFEEAHATKQSVVALGSQEGGLHQALAGAIVVEYSS
SVKLTSGHLKCRLKMDKLALKGTTYGMCTEKFSFAKNPADTGHGTVVIELTYSGSDGP
CKIPIVSVASLNDMTPVGRLVTVNPFVATSSSNSKVLVEMEPPFGDSYIVVGRGDKQI
NHHWHKAGSTLGKAFSTTLKGAQRLAALGDTAWDFGSIGGVFNSIGKAVHQVFGGAFR
TLFGGMSWITQGLMGALLLWMGVNARDRSIALAFLATGGVLVFLATNVHA"
BASE COUNT 414 a 345 c 399 g 342 t
ORIGIN
1 tttaactgtt tgggaatggg gaatcgggac ttcatagaag gagccagtgg agccacttgg
61 gtggatctgg tgttagaagg agatagctgt ttgacaatca tggcaaacga caaaccaaca
121 ctagatgtcc gcatgatcaa cattgaagct agccaacttg ctgaagtcag gagttactgc
181 tatcacgctt cagtcactga catttcaacg gtggctcgat gccccacgac aggagaagct
241 cacaacgaaa aacgtgccga cagcagctac gtgtgcaaac aaggctttac tgatcgcgga
301 tggggaaatg gatgtggact tttcgggaaa ggaagcattg acacatgcgc aaaattttct
361 tgtaccaata aggccattgg aagaatgatc caaccagaga acatcaagta cgaggttggc
421 atattcgtgc acggaaccac cacctcggaa aaccatggga attactcagc gcaagtagga
481 gcgtctcaag cagcaaagtt tactgtaact ccaaatgctc cctcaataac cctcaagctt
541 ggtgattatg gagaagtcac actggattgt gaaccaagga gtggactgaa cactgaagcg
601 ttctatgtca tgaccgtggg ttcgaagtca ttcttagtcc atagggaatg gttccatgac
661 ctttctcttc cctggacgtc cccctcaagc acggcatgga gaaacagaga actcctcatg
721 gaatttgaag aggcacatgc cacaaaacaa tctgtcgtag ctcttgggtc acaggaggga
781 ggcctccatc aagcgttggc aggagccatc gtagtggagt actcgagctc agtgaagttg
841 acatcaggtc acctgaaatg caggctaaaa atggacaaac tagctctgaa gggcacgact
901 tatggcatgt gtacagagaa attctcgttc gcgaaaaatc cagcggacac aggccatgga
961 acagttgtca ttgagctcac atactctgga agtgatggtc cctgtaaaat tccgattgtc
1021 tcagtcgcga gtttaaacga catgacccct gtggggaggc tggtaacagt aaaccccttc
1081 gtcgcaacat ctagctccaa ctcaaaggtg ctggttgaga tggaacctcc cttcggagac
1141 tcttatatcg tggttggaag aggggacaag cagattaacc atcactggca caaagctgga
1201 agcacgctgg gtaaagcctt ctcaacaact ttgaaagggg ctcagagact agcagcgcta
1261 ggcgacacag cctgggactt cggctccatt ggaggggttt ttaactccat agggaaagct
1321 gttcaccaag tatttggcgg tgcattcaga acgctctttg ggggaatgtc ttggatcaca
1381 caaggactaa tgggggcctt acttctttgg atgggtgtca acgcacgaga ccggtcaatc
1441 gccctggctt ttctggccac gggaggtgtg ctcgtgtttt tagcgaccaa tgtgcatgcc
//