LOCUS AB623431 1352 bp cRNA linear VRL 26-JUL-2014 DEFINITION Human parainfluenza virus 3 HN gene for hemagglutinin-neuraminidase, partial cds, strain: HPIVi/Yamagata/2002/1548. ACCESSION AB623431 VERSION AB623431.1 KEYWORDS . SOURCE Human parainfluenza virus 3 ORGANISM Human respirovirus 3 Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Respirovirus; Respirovirus pneumoniae. REFERENCE 1 (bases 1 to 1352) AUTHORS Mizuta,K., Tsukagoshi,H., Abiko,C., Itagaki,T., Ryo,A., Noda,M., Kozawa,K., Ahiko,T. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (06-APR-2011) to the DDBJ/EMBL/GenBank databases. Contact:Hiroyuki Tsukagoshi Gunma Prefectural Institute of Public Health and Environmental Sciences; 378 kamioki-machi, Maebashi-shi, Gunma 371-0052, Japan REFERENCE 2 AUTHORS Mizuta,K., Tsukagoshi,H., Ikeda,T., Aoki,Y., Abiko,C., Itagaki,T., Nagano,M., Noda,M. and Kimura,H. TITLE Molecular evolution of the haemagglutinin-neuraminidase gene in human parainfluenza virus type 3 isolates from children with acute respiratory illness in Yamagata prefecture, Japan JOURNAL J. Med. Microbiol. 63, 570-577 (2014) REMARK DOI:10.1099/jmm.0.068189-0 COMMENT FEATURES Location/Qualifiers source 1..1352 /collection_date="2002-05-31" /country="Japan:Yamagata" /db_xref="taxon:11216" /host="Homo sapiens" /isolation_source="throat swab from child with acute respiratory illness" /mol_type="viral cRNA" /organism="Human parainfluenza virus 3" /strain="HPIVi/Yamagata/2002/1548" CDS <1..>1350 /codon_start=1 /gene="HN" /product="hemagglutinin-neuraminidase" /protein_id="BAO50954.1" /transl_table=1 /translation="SLTQQISDLRKFISEITIRNDNQEVPPQRITHDVGIKPLNPDDF WRCTSGLPSLMRTPKIRLMPGPGLLAMPTTVDGCVGTPSLVINDLIYAYTSNLITRGC QDIGKSYQVLQIGIITVNSDLVPDLNPKISHTFNINDNRKSCSLALLNTDVYQLCSTP KVDERSDYASSGIEDIVLDIVNYDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKG KIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGL NSVPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIR IKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVN PVITYSTATERVNELAIRNRTLSAGYTTTSCITHYNKGYCFHIVEINHKSLNTFQPML " BASE COUNT 489 a 253 c 249 g 361 t ORIGIN 1 tcattaacac aacaaatatc ggatcttagg aaattcatta gtgaaattac aattagaaat 61 gataatcaag aagtgccacc acaaagaata acacatgatg taggtataaa acctctaaat 121 ccagatgatt tctggagatg cacgtctggt cttccatctt tgatgagaac tccaaaaata 181 agattaatgc cggggccggg attactagct atgccaacga ctgttgatgg ctgtgttgga 241 actccgtcct tagtgataaa tgatctgatt tatgcttaca cctcaaatct aattactcga 301 ggttgccagg atataggaaa atcatatcaa gtattacaga tagggataat aactgtaaat 361 tcagacttag tacctgactt aaatcccaag atctctcata ccttcaacat aaatgacaat 421 agaaagtcat gttctctagc actcctaaat acagatgtat atcaactgtg ttcaactccc 481 aaagttgatg aaagatcaga ctatgcatca tcaggcatag aagatattgt acttgatatt 541 gtcaactatg atggctcaat ctcaacaaca agatttaaaa ataataatat aagttttgat 601 caaccatatg cggcattata cccatctgtt ggaccaggga tatactacaa aggcaaaata 661 atatttcttg ggtatggagg tcttgaacat ccaataaatg agaatgcaat ctgtaacaca 721 actgggtgtc ctgggaaaac acagagagac tgcaatcagg cgtctcatag tccatggttt 781 tcagatagaa ggatggtcaa ctccatcatt gttgttgaca agggtttaaa ctcagttcca 841 aaattgaagg tatggacgat atctatgaga caaaattact ggggatcaga aggaagatta 901 cttttactag gtaacaagat ctacatatat acaagatcta caagttggca cagcaagtta 961 caattaggaa taattgacat tactgactac agtgatataa ggataaaatg gacatggcat 1021 aatgtgctat caagaccagg aaacaatgaa tgtccatggg gacattcatg tccagatgga 1081 tgcataacag gagtgtatac tgatgcatat ccgctcaatc ccacaggaag cattgtgtca 1141 tctgtcatat tagattcaca aaaatcgaga gtcaacccag tcataactta ctcaacagcc 1201 accgaaaggg tgaacgagct ggccatccga aacagaacac tctcagctgg atatacaaca 1261 acaagctgca ttacacacta taacaaagga tattgttttc acatagtaga aataaatcat 1321 aaaagcttaa acacatttca acccatgttg tt //