LOCUS LC422403 1517 bp DNA linear BCT 09-NOV-2019
DEFINITION Aquabacterium pictum W35 pufL, pufM genes forL subunit of the
photosynthetic reaction center, M subunit of the photosynthetic
reaction center, partial cds.
ACCESSION LC422403
VERSION LC422403.1
KEYWORDS .
SOURCE Aquabacterium pictum
ORGANISM Rubrivivax pictus
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
Sphaerotilaceae; Rubrivivax.
REFERENCE 1 (bases 1 to 1517)
AUTHORS Hirose,S. and Hanada,S.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2018) to the DDBJ/EMBL/GenBank databases.
Contact:Setsuko Hirose
Tokyo Metropolitan University, Department of Biological Sciences;
1-1 Minami-Osawa, Hachioji, Tokyo 192-0397, Japan
URL :https://www.tmu.ac.jp/
REFERENCE 2
AUTHORS Hirose,S., Tank,M., Hara,E., Tamaki,H., Mori,K., Takaichi,S.,
Haruta,S. and Hanada,S.
TITLE Aquabacterium pictum sp. nov., the first aerobic
bacteriochlorophyll a-containing fresh water bacterium in the
genus Aquabacterium of the class Betaproteobacteria
JOURNAL Int. J. Syst. Evol. Microbiol. (2019) In press
REMARK Publication Status: Available-Online prior to print
DOI:10.1099/ijsem.0.003798
REFERENCE 3
AUTHORS Hirose,S., Matsuura,K. and Haruta,S.
TITLE Phylogenetically Diverse Aerobic Anoxygenic Phototrophic Bacteria
Isolated from Epilithic Biofilms in Tama River, Japan
JOURNAL Microbes Environ. 31, 299-306 (2016)
REMARK DOI:10.1264/jsme2.ME15209
COMMENT
FEATURES Location/Qualifiers
source 1..1517
/collected_by="Setsuko Hirose"
/collection_date="2012-02-20"
/country="Japan"
/db_xref="taxon:2315236"
/isolation_source="river epilithic biofilm"
/lat_lon="35.79 N 139.25 E"
/mol_type="genomic DNA"
/organism="Aquabacterium pictum"
/PCR_primers="fwd_name: pufLM-F, fwd_seq:
ctkttcgacttctgggtsgg, rev_name: pufLM-R, rev_seq:
cccatsgtccagcgccagaa"
/strain="W35"
/type_material="type strain of Aquabacterium pictum"
CDS <1..713
/codon_start=3
/gene="pufL"
/product="L subunit of the photosynthetic reaction center"
/protein_id="BBG28352.1"
/transl_table=11
/translation="AAFFAILGTLLIIWGASMGTTWNIWQINIAPPDLSYGLRMAPMA
EGGLWQVITICATGAFVSWALREVEICRKLGMGFHVPIAFGVAIFAYVTLVIFRPLLL
GAWGHGFPYGILSHLDWVSNTGYQYLHFHYNPAHMLAITFFFTNALALSMHGGLILAM
TNPQKGEPVKTPEHENTFFRDAIGYSIGSLGIHRLGLFLALSAGFWSAVCIIISGPFW
TRGWPEWWGWWLSLPVWR"
CDS 762..>1517
/codon_start=1
/gene="pufM"
/product="M subunit of the photosynthetic reaction center"
/protein_id="BBG28353.1"
/transl_table=11
/translation="MAEYQNIFTRVQVHGPSYPGVPLSYPGEEQERKGPPLHIHLLGR
IGDAQLGPIYLGWLGVVSLICGFIAFEIIGLNMLAQVNWDPIQFVRQLFWLALEPPAA
EYGLRIPPLAKGGWWLIAGFFLTLSILLWWLRMYRRAKALGIGTHIPWAFAAAIWLYL
VLGFIRPVMMGSWSEAVPFGIFPHLDWTAAFSLRYGNLFYNPFHMLSIAFLYGSALIF
AMHGATILAVTRFGGEREIEQIYDRGTASERAAL"
BASE COUNT 221 a 530 c 482 g 284 t
ORIGIN
1 ccgcggcatt cttcgccatc ctcggtacgc tgctgatcat ctggggtgcc agcatgggca
61 ccacctggaa catctggcag atcaacatcg ccccgcccga cctgagctac ggcctgcgca
121 tggcgccgat ggccgagggc ggcctgtggc aggtgatcac gatctgcgcc accggggcat
181 tcgtctcgtg ggcgctgcgc gaggtggaga tctgccgcaa gctgggcatg ggcttccatg
241 tgcccatcgc cttcggcgtg gccatcttcg cctacgtcac gctggtgatc ttccgcccgc
301 tgctgctggg tgcctggggc cacggcttcc cgtacggcat cctgagccac ctggactggg
361 tgtcgaacac cggctaccag tacctgcact tccactacaa cccggcgcac atgctggcca
421 tcacgttctt cttcacgaac gcgctggccc tgtcgatgca cggcggcctc atcctggcga
481 tgaccaaccc gcagaagggt gagccggtca agacgccgga acacgagaac accttcttcc
541 gcgacgccat cggctactcc atcggctcgc tcggcatcca ccgcctgggc ctgttcctgg
601 cgctgtcggc aggcttctgg agcgcggtgt gcatcatcat cagcgggccc ttctggaccc
661 gcggctggcc cgagtggtgg ggctggtggc tcagcctgcc ggtctggcgc tgacagcccg
721 caccgccaag acgcaacaag aaccagccag gagcccagaa catggccgag taccagaaca
781 tcttcacccg cgtgcaagtg cacgggccgt cgtatcccgg ggtgccgctc agctacccgg
841 gcgaggagca ggagcgcaag ggcccgcccc tgcacatcca cctgctgggg cgcatcggcg
901 atgcgcagct cggccccatc taccttggct ggctgggcgt ggtgtcgctg atctgcggct
961 tcatcgcctt cgagatcatc ggcctgaaca tgctggccca ggtgaactgg gacccgatcc
1021 agttcgtgcg gcagctgttc tggctggcgc tggagccgcc tgcggccgag tacggcctgc
1081 gcattccacc gctggccaag ggcggctggt ggctgatcgc cggcttcttc ctgacgctgt
1141 cgatcctgct gtggtggctg cgcatgtacc gccgtgccaa ggcgctgggc atcggcaccc
1201 acatcccctg ggcctttgcg gcggcgatct ggctgtacct ggtgctgggt ttcatccgcc
1261 cggtgatgat gggcagctgg agtgaagcgg ttccgttcgg gatcttcccc cacctcgact
1321 ggacggcggc cttctcgcta cgctacggca acctgttcta caacccgttc cacatgctgt
1381 cgatcgcctt cctctacggg tcggcgctga tcttcgcgat gcacggtgcc accatcctgg
1441 cggtcacccg cttcggcggc gagcgcgaga tcgagcagat ctacgaccgc ggcaccgcca
1501 gcgagcgggc cgccctg
//