LOCUS HR309253 894 bp DNA linear GSS 21-MAY-2012
DEFINITION PV_ABa091E23.R PV_ABa Panicum virgatum genomic 3', genomic survey
sequence.
ACCESSION HR309253
VERSION HR309253.1
DBLINK BioSample: SAMN00188700
KEYWORDS GSS.
SOURCE Panicum virgatum (switchgrass)
ORGANISM Panicum virgatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum;
Panicum sect. Hiantes.
REFERENCE 1 (bases 1 to 894)
AUTHORS Sharma,M.K., Sharma,R., Cao,P., Jenkins,J., Bartley,L.E.,
Qualls,M., Grimwood,J., Schmutz,J., Rokhsar,D. and Ronald,P.C.
TITLE A genome-wide survey of switchgrass genome structure and
organization
JOURNAL PLoS ONE 7 (4), e33892 (2012)
PUBMED 22511929
COMMENT Contact: Grimwood, J
JGI-HudsonAlpha
HudsonAlpha Genome Sequencing Center
601 Genome Way, Huntsville, AL 35806, USA
Tel: 256 327 5212
Fax: 256 327 0964
Email: jgrimwood@hudsonalpha.org
Insert Length: 898 Std Error: 0.00
Plate: 091 row: E column: 23
Seq primer: SP6
Class: BAC ends
High quality sequence start: 19.
FEATURES Location/Qualifiers
source 1..894
/organism="Panicum virgatum"
/mol_type="genomic DNA"
/db_xref="taxon:38727"
/clone_lib="SAMN00188700 PV_ABa"
/note="Vector: pIndigoBac536; Site_1: HindIII; The library
was constructed and clones can be obtained from Clemson
University Genomics Institute
(http://www.genome.clemson.edu/)"
BASE COUNT 299 a 160 c 181 g 248 t
ORIGIN
1 ttctatgtcc nnnnnncgat ttcaaaaaaa atttttgtaa ataactctgt tcaaaattag
61 tagtacaaaa tataatcatc attcaaaaaa atcattatta gtaatgatta tgcaatgcat
121 atagaatgct tagattgtta tagttacatg atatcaataa aggaaagagg tagataagac
181 gtagggaggt gtatatgaga gttcgtatgg tgaagctata taatgattag gggtactaat
241 gcacccccta aaattggaaa aatagtaata atgtctaaat attcaccata tttgcacccc
301 tacgattcaa ctctatgtgt atataagaca agtgcactct tctccaaatt gctctaactt
361 cgccactgag aattcggttg gcctgtgaaa gaaagtaggg gagttgaaat ctggacgaga
421 ggtcctcatc tagaggaaca ggggctcaaa ttaagagttt cattggagtt atcctcgcac
481 cgtcgtattt cagcccaaac gacaacagac ccctgtatca tcgcttcccg gcaggtgttt
541 tggatgacaa ctcatctcgt aatatagcat cccaaacgac aagatattat tagcacatag
601 caggatggtg ggtgtggtgg ggcaatggtg atcttagctc aaatttaggt tggatagagc
661 ttggataaca aactaaccaa actagaagga acacataaac accatgttca catataacaa
721 tcataaaaat taatattaaa caacgtccac aaccagagca catacgtcgg gatggcttac
781 ccgccggcac gggcacctac gggtttcata cccgacgggt gaatgtatgg ttatgatacg
841 aataaattat gctggacaga gtgtttagat ctttgtacta taaagttttg catt
//