LOCUS HQ606469 1641 bp cRNA linear VRL 25-JUL-2016
DEFINITION Influenza A virus (A/Shiraz/14/2010(H1N1)) segment 1 polymerase PB2
(PB2) gene, partial cds.
ACCESSION HQ606469
VERSION HQ606469.1
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Shiraz/14/2010(H1N1))
ORGANISM Influenza A virus (A/Shiraz/14/2010(H1N1))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 1641)
AUTHORS Moattari,A.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2010) Virology Department, Shiraz University of
Medical Science, Shiraz, Fars, Iran
COMMENT Swine influenza A (H1N1) virus isolated during human swine flu
outbreak of 2009-2010.
FEATURES Location/Qualifiers
source 1..1641
/organism="Influenza A virus (A/Shiraz/14/2010(H1N1))"
/mol_type="viral cRNA"
/strain="A/Shiraz/14/2010"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:927194"
/segment="1"
/country="Iran"
/collection_date="Feb-2010"
/note="lineage: swl"
gene <1..1592
/gene="PB2"
CDS <1..1592
/gene="PB2"
/codon_start=3
/product="polymerase PB2"
/protein_id="ADQ43769.1"
/translation="VLNLTQGTCWLQMYTPGGDLRNDDVDQSLIIAARNIVRRAAVSA
DPLASLLEMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKR
TSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRD
EQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQN
WGIESIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRD
QRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQW
SQDPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFA
AAPPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPD
ECTSGMESAVMRGFLILDKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRK
RDSSILTDSQTATKRIRMAIN"
BASE COUNT 540 a 307 c 421 g 373 t
ORIGIN
1 aagtgttgaa cttaacccaa ggtacgtgct ggttgcagat gtacactcca ggaggagatc
61 tgagaaatga tgatgttgac caaagtttga ttatcgctgc tagaaacata gtaagaagag
121 cagcagtgtc agcagaccca ttagcatctc tcttggaaat gtgccacagc acacagattg
181 gaggagtaag gatggtggac atccttagac agaatccaac tgaggaacaa gccgtagaca
241 tatgcaaggc agcaataggg ttgaggatta gctcatcttt cagttttggt gggttcactt
301 tcaaaaggac aagcggatca tcagtcaaga aagaagaaga agtgctaacg ggcaacctcc
361 aaacactgaa aataagagta catgaagggt atgaagaatt cacaatggtt gggagaagag
421 caacagctat tctcagaaag gcaaccagga gattgatcca gttgatagta agcgggagag
481 acgagcagtc aattgctgag gcaataattg tggccatggt attctcacaa gaggattgca
541 tgatcaaggc agttaggggc gatctgaact ttgtcaatag ggcaaaccag cgactgaacc
601 ccatgcacca actcttgagg catttccaaa aagatgcaaa agtgcttttc cagaactggg
661 gaattgaatc catcgacaat gtgatgggaa tgatcggaat actgcccgac atgaccccaa
721 gcacggagat gtcgctgaga gggataagag tcagcaaaat gggagtagat gaatactcca
781 gcacggagag agtggtagtg agtattgacc gatttttaag ggttagagat caaagaggga
841 acgtactatt gtctcccgaa gaagtcagtg aaacgcaagg aactgagaag ttgacaataa
901 cttattcgtc atcaatgatg tgggagatca atggccctga gtcagtgcta gtcaacactt
961 atcaatggat aatcaggaac tgggaaattg tgaaaattca atggtcacaa gatcccacaa
1021 tgttatacaa caaaatggaa tttgaaccat ttcagtctct tgtccctaag gcaaccagaa
1081 gccggtacag tggattcgta aggacactgt tccagcaaat gcgggatgtg cttgggacat
1141 ttgacactgt ccaaataata aaacttctcc cctttgctgc tgctccacca gaacagagta
1201 ggatgcaatt ttcctcattg actgtgaatg tgagaggatc agggttgagg atactggtaa
1261 gaggcaattc tccagtattc aattacaaca aggcaaccaa acgacttaca gttcttggaa
1321 aggatgcagg tgcattgact gaagatcccg atgaatgcac atctgggatg gagtctgctg
1381 tcatgagagg atttctcatt ttggacaaag aagacaagag atatggccca gcattaagca
1441 tcaacgaact gagcaatctt gcaaaaggag agaaagctaa tgtgctaatt gggcaagggg
1501 acgtagtgtt ggtaatgaaa cgaaaacgag actctagcat acttactgac agccagacag
1561 cgaccaaaag aattcggatg gccatcaatt agtcgaattg tttaaaaacg accttgtttc
1621 caacctcgag gggagtgtta g
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