LOCUS HQ606466 1748 bp cRNA linear VRL 28-SEP-2011 DEFINITION Influenza A virus (A/emu/Israel/552/2010(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION HQ606466 VERSION HQ606466.1 KEYWORDS . SOURCE Influenza A virus (A/emu/Israel/552/2010(H5N1)) ORGANISM Influenza A virus (A/emu/Israel/552/2010(H5N1)) Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 1748) AUTHORS Amnon,I., Shkoda,I., Lapin,E., Raibstein,I., Rosenbluth,E., Nagar,S., Perk,S., Bellaiche,M. and Davidson,I. TITLE Isolation and identification of highly pathogenic avian influenza virus subtype H5N1 from emus from the Ein Gedi oasis by the Dead Sea JOURNAL Avian Dis. 55 (3), 499-502 (2011) PUBMED 22017055 REFERENCE 2 (bases 1 to 1748) AUTHORS Shkoda,I., Lapin,K., Raibstein,I., Davidson,I., Inbar,A. and Perk,S. TITLE Direct Submission JOURNAL Submitted (14-NOV-2010) Division of Avian and Aquatic Diseases, Kimron Veterinari Institute, P.O. Box 12, Bet Dagan 50250, Israel FEATURES Location/Qualifiers source 1..1748 /organism="Influenza A virus (A/emu/Israel/552/2010(H5N1))" /mol_type="viral cRNA" /strain="A/emu/Israel/552/2010" /serotype="H5N1" /host="emu" /db_xref="taxon:927195" /segment="4" /country="Israel: Ein Gedi" /collection_date="May-2010" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="ADQ53454.1" /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKNSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNNAYPTIKKSYNNTNQEDLLVLWGIHHPNDEAEQTRLYQNSTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGERRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVTSSLALAIMVAGLFLWMCSNGSLQCRIC I" BASE COUNT 622 a 311 c 386 g 429 t ORIGIN 1 atggagaaaa tagtgcttct tcttgcaata gtcagtattg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcgacagag caagttgaca caataatgga aaagaacgtc 121 actgttacac acgcccaaga catactggaa aagacacaca acgggaaact ctgcaatcta 181 gatggagtga agcctctaat tttaagagat tgtagtgtag ctggatggct cctcgggaac 241 ccaatgtgcg acgaattcct caatgtgccg gaatggtctt acatagtgga gaagatcaat 301 ccagccaatg acctctgtta tccagggaat ttcaacgact atgaagaact gaaacaccta 361 ttgagcagaa taaaccattt tgagaaaatt cagatcattc ccaaaaattc ttggtcagat 421 catgaagcct caggagtgag ttcagcatgt ccataccagg gaagatcctc cttttttaga 481 aatgtggtat ggcttaccaa aaagaacaat gcatacccaa caataaagaa aagttacaat 541 aataccaacc aagaagatct tttggtacta tgggggattc accatccaaa tgatgaggca 601 gagcagacaa ggctttatca aaactcaact acctatattt ccgttgggac atcaacacta 661 aaccagagat tggtaccaaa aatagctact agatctaagg taaacgggca aagtggaagg 721 atggagttct tttggacaat tttaaaatcg aatgatgcaa taaactttga gagtaatgga 781 aatttcattg ctccagaaaa tgcatacaaa attgtcaaga aaggggactc aacaattatg 841 aaaagtgaat tggaatatgg caactgcaac accaagtgtc agactccaat aggggcgata 901 aactccagta tgccattcca caacatccac cctctcacta tcggggaatg ccccaaatat 961 gtgaaatcaa acagattagt ccttgctact gggctcagaa atagccctca aggagagaga 1021 agaagaaaaa agagaggact atttggagct atagcaggtt ttatagaggg cggatggcaa 1081 ggaatggtag atggttggta tgggtaccac catagcaacg agcaggggag tgggtatgct 1141 gcagacaaag aatccactca aaaggcaata gatggagtca ccaataaggt caactcgatc 1201 attgacaaaa tgaacactca gtttgaggct gttggaaggg aatttaataa cttagaaagg 1261 agaatagaaa atttaaacaa gaagatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttc tggttctcat ggaaaatgag agaactctag actttcatga ctcaaatgtc 1381 aagaaccttt atgacaaggt ccgactacag cttaaggata atgcaaagga gcttggtaac 1441 ggttgtttcg agttctatca cagatgtgat aatgaatgta tggaaagtgt aagaaacgga 1501 acgtatgact acccgcagta ttcagaagaa gcaagattaa aaagagagga aataagtgga 1561 gtaaaattgg agtcaatagg aacttaccaa atactgtcaa tttattcaac agtgacgagc 1621 tccctagcac tggcaatcat ggtggctggt ctatttttat ggatgtgctc caatggatcg 1681 ttacaatgca gaatttgcat ttaaatttgt gaattcaaat tgtagttaaa aacacccttg 1741 tttctact //