LOCUS       HQ606466                1748 bp    cRNA    linear   VRL 28-SEP-2011
DEFINITION  Influenza A virus (A/emu/Israel/552/2010(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   HQ606466
VERSION     HQ606466.1
KEYWORDS    .
SOURCE      Influenza A virus (A/emu/Israel/552/2010(H5N1))
  ORGANISM  Influenza A virus (A/emu/Israel/552/2010(H5N1))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Amnon,I., Shkoda,I., Lapin,E., Raibstein,I., Rosenbluth,E.,
            Nagar,S., Perk,S., Bellaiche,M. and Davidson,I.
  TITLE     Isolation and identification of highly pathogenic avian influenza
            virus subtype H5N1 from emus from the Ein Gedi oasis by the Dead
            Sea
  JOURNAL   Avian Dis. 55 (3), 499-502 (2011)
   PUBMED   22017055
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Raibstein,I., Davidson,I., Inbar,A. and
            Perk,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2010) Division of Avian and Aquatic Diseases,
            Kimron Veterinari Institute, P.O. Box 12, Bet Dagan 50250, Israel
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/emu/Israel/552/2010(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/emu/Israel/552/2010"
                     /serotype="H5N1"
                     /host="emu"
                     /db_xref="taxon:927195"
                     /segment="4"
                     /country="Israel: Ein Gedi"
                     /collection_date="May-2010"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ADQ53454.1"
                     /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKNSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNNAYPTIKKSYNNTNQEDLLVLWGIHHPNDEAEQTRLYQNSTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGERRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVTSSLALAIMVAGLFLWMCSNGSLQCRIC
                     I"
BASE COUNT          622 a          311 c          386 g          429 t
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gtcagtattg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca caataatgga aaagaacgtc
      121 actgttacac acgcccaaga catactggaa aagacacaca acgggaaact ctgcaatcta
      181 gatggagtga agcctctaat tttaagagat tgtagtgtag ctggatggct cctcgggaac
      241 ccaatgtgcg acgaattcct caatgtgccg gaatggtctt acatagtgga gaagatcaat
      301 ccagccaatg acctctgtta tccagggaat ttcaacgact atgaagaact gaaacaccta
      361 ttgagcagaa taaaccattt tgagaaaatt cagatcattc ccaaaaattc ttggtcagat
      421 catgaagcct caggagtgag ttcagcatgt ccataccagg gaagatcctc cttttttaga
      481 aatgtggtat ggcttaccaa aaagaacaat gcatacccaa caataaagaa aagttacaat
      541 aataccaacc aagaagatct tttggtacta tgggggattc accatccaaa tgatgaggca
      601 gagcagacaa ggctttatca aaactcaact acctatattt ccgttgggac atcaacacta
      661 aaccagagat tggtaccaaa aatagctact agatctaagg taaacgggca aagtggaagg
      721 atggagttct tttggacaat tttaaaatcg aatgatgcaa taaactttga gagtaatgga
      781 aatttcattg ctccagaaaa tgcatacaaa attgtcaaga aaggggactc aacaattatg
      841 aaaagtgaat tggaatatgg caactgcaac accaagtgtc agactccaat aggggcgata
      901 aactccagta tgccattcca caacatccac cctctcacta tcggggaatg ccccaaatat
      961 gtgaaatcaa acagattagt ccttgctact gggctcagaa atagccctca aggagagaga
     1021 agaagaaaaa agagaggact atttggagct atagcaggtt ttatagaggg cggatggcaa
     1081 ggaatggtag atggttggta tgggtaccac catagcaacg agcaggggag tgggtatgct
     1141 gcagacaaag aatccactca aaaggcaata gatggagtca ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca gtttgaggct gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaaa atttaaacaa gaagatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttc tggttctcat ggaaaatgag agaactctag actttcatga ctcaaatgtc
     1381 aagaaccttt atgacaaggt ccgactacag cttaaggata atgcaaagga gcttggtaac
     1441 ggttgtttcg agttctatca cagatgtgat aatgaatgta tggaaagtgt aagaaacgga
     1501 acgtatgact acccgcagta ttcagaagaa gcaagattaa aaagagagga aataagtgga
     1561 gtaaaattgg agtcaatagg aacttaccaa atactgtcaa tttattcaac agtgacgagc
     1621 tccctagcac tggcaatcat ggtggctggt ctatttttat ggatgtgctc caatggatcg
     1681 ttacaatgca gaatttgcat ttaaatttgt gaattcaaat tgtagttaaa aacacccttg
     1741 tttctact
//