LOCUS GU369694 1993 bp DNA linear MAM 24-FEB-2010 DEFINITION Loxodonta africana MHC class II antigen (Loaf-DQA) gene, Loaf-DQA*01 allele, complete cds. ACCESSION GU369694 VERSION GU369694.1 KEYWORDS . SOURCE Loxodonta africana (African savanna elephant) ORGANISM Loxodonta africana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta. REFERENCE 1 (bases 1 to 1993) AUTHORS Archie,E.A., Henry,T., Maldonado,J.E., Moss,C.J., Poole,J.H., Pearson,V.R., Murray,S., Alberts,S.C. and Fleischer,R.C. TITLE Major histocompatibility complex variation and evolution at a single, expressed DQA locus in two genera of elephants JOURNAL Immunogenetics 62 (2), 85-100 (2010) PUBMED 20058003 REFERENCE 2 (bases 1 to 1993) AUTHORS Archie,E.A., Henry,T., Maldonado,J.E., Moss,C.J., Poole,J.H., Pearson,V.R., Murray,S., Alberts,S.C. and Fleischer,R.C. TITLE Direct Submission JOURNAL Submitted (29-DEC-2009) Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA FEATURES Location/Qualifiers source 1..1993 /organism="Loxodonta africana" /mol_type="genomic DNA" /db_xref="taxon:9785" gene <1..1993 /gene="Loaf-DQA" /allele="Loaf-DQA*01" mRNA join(<1..81,182..431,851..1132,1371..1544,1729..1993) /gene="Loaf-DQA" /allele="Loaf-DQA*01" /product="MHC class II antigen" CDS join(1..81,182..431,851..1132,1371..1525) /gene="Loaf-DQA" /allele="Loaf-DQA*01" /codon_start=1 /product="MHC class II antigen" /protein_id="ADC91869.1" /translation="MILNEALTLGVLVLTTMMSNGGGEDIVADHVGCYGTNIYQSYGP SGQYTHEFDGDELFYVDLEKKETVWRLPMFSKFESFDPQGGLRNIAVLKHNLDILIKR SNSTAATKEVPEVTVFPKSPVTLGQPNLLICFVDNIFPPVIKITWLSNGHVVTEGVAE TNFLPKDDHSFSKISYLTFLPSADDVYDCKVDHWGLEKPLLKHWEPEIPTPMTELTET VVCALGLVVGLVGIVVGTILIIRGLRSGSVSRHQGTL" exon <1..81 /gene="Loaf-DQA" /allele="Loaf-DQA*01" /number=1 gap 82..181 /estimated_length=unknown exon 182..431 /gene="Loaf-DQA" /allele="Loaf-DQA*01" /number=2 exon 851..1132 /gene="Loaf-DQA" /allele="Loaf-DQA*01" /number=3 exon 1371..1544 /gene="Loaf-DQA" /allele="Loaf-DQA*01" /number=4 exon 1729..1993 /gene="Loaf-DQA" /allele="Loaf-DQA*01" /number=5 BASE COUNT 480 a 518 c 388 g 507 t ORIGIN 1 atgatcctaa atgaagctct gactctgggg gtccttgtcc tgactaccat gatgagcaac 61 ggtggaggtg aagacattgt gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 181 ngctgaccat gttggctgct atggcacaaa catctaccag tcttatggtc ccagtggcca 241 atacacccat gaatttgatg gagatgagct gttctacgtg gacctggaga agaaggagac 301 tgtgtggcga ctacctatgt ttagcaaatt tgaaagtttt gacccacaag gtggactgag 361 gaacatagct gtgctaaaac acaacttgga catcttgatt aaacgttcca actctactgc 421 tgctaccaaa ggtatgcata caccatcccg tatctcttta ttgaatctat ccctccacac 481 caagtctcac ttcattcttc cttagagata gatacccatc tcaccatgct atagaactct 541 ctcctttaca aggagttccc acttcttctc atggtaattg ctgaaacctc atcatcaccc 601 ttctcacatt cccatgtaat acaagggccc ttactgccat catgcattcc ttgcctcctt 661 ctaggatggg tcccatagac ctcctagctt aaagaaggta cagggataaa gtgcaggcag 721 tacacagtga ttcccaagcc aaagggaaac aaaaaccctt ccactttcag gtggagaaat 781 attggtggga gggctccccc aagatgcaat gctattagca attcatacca gtgccatgtc 841 ctcaccacag aggttcctga agtgactgtg tttcccaagt ctcccgtgac gctgggacag 901 cccaacctcc tcatctgttt tgtggacaac atctttcctc ctgtaatcaa gatcacatgg 961 ttgagcaatg ggcacgtagt cacagaaggt gttgctgaga ccaacttcct ccccaaggat 1021 gatcactcct tctccaagat cagttacctc accttcctcc cttctgctga tgacgtttat 1081 gactgcaagg tggaccactg gggcctggaa aagcctcttt tgaagcactg gggtatgtat 1141 gaactccacc caattttggt ctctgttaag tccagaacat cctgcctttc agcccctaag 1201 tctcatgacc caaaacttgt ttcccacact tcaaggtttt gaatgacaga ctttactctc 1261 ctccctgagc ctagtgcccc aagtccttgc aaatataccc ctcatactgc tccatacaca 1321 tgcacataaa cctactctgt attctgacct caacaacttc actttcacag aacctgagat 1381 tccaacccct atgacagagc tgactgagac tgtggtctgt gccttgggat tggtcgtggg 1441 cctcgtgggc atcgtggtgg gcaccatcct catcatccga ggcctacgct caggaagtgt 1501 ctccagacac caagggacct tgtgagccgc accctacaag aaagaaaggt aagggttcag 1561 atttgttaga gctggagccc cagtacagga ggaaagaaag ctgtaggaga actctgggga 1621 cagtaatgtg gttgaaaagt tgtaggagga tttggaaaaa tggcattacg agggcacagg 1681 agccccccct cccctgtacc cctcaatttc atgtatctcc tgttgcaggt acaatgtcca 1741 tctacgagaa cagaagagga gacttgctac gtgacctagc attattttct ggccaagttc 1801 atcatattcc ttctctcctc ctaaggctcc tcctctcact tcttttctgg gacttaaggt 1861 gctgaatccc ctcagagctc acatgcccct ctgaattcca ccctccacca ccatatcttg 1921 atttttttct tttctcagtt gttacctacc atgggaatcc ctgggatatt ccacctaaat 1981 gcctaatccc tta //