LOCUS       GU369694                1993 bp    DNA     linear   MAM 24-FEB-2010
DEFINITION  Loxodonta africana MHC class II antigen (Loaf-DQA) gene,
            Loaf-DQA*01 allele, complete cds.
ACCESSION   GU369694
VERSION     GU369694.1
KEYWORDS    .
SOURCE      Loxodonta africana (African savanna elephant)
  ORGANISM  Loxodonta africana
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae;
            Loxodonta.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Archie,E.A., Henry,T., Maldonado,J.E., Moss,C.J., Poole,J.H.,
            Pearson,V.R., Murray,S., Alberts,S.C. and Fleischer,R.C.
  TITLE     Major histocompatibility complex variation and evolution at a
            single, expressed DQA locus in two genera of elephants
  JOURNAL   Immunogenetics 62 (2), 85-100 (2010)
   PUBMED   20058003
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Archie,E.A., Henry,T., Maldonado,J.E., Moss,C.J., Poole,J.H.,
            Pearson,V.R., Murray,S., Alberts,S.C. and Fleischer,R.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2009) Department of Biological Sciences,
            University of Notre Dame, Notre Dame, IN 46556, USA
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Loxodonta africana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:9785"
     gene            <1..1993
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
     mRNA            join(<1..81,182..431,851..1132,1371..1544,1729..1993)
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /product="MHC class II antigen"
     CDS             join(1..81,182..431,851..1132,1371..1525)
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /codon_start=1
                     /product="MHC class II antigen"
                     /protein_id="ADC91869.1"
                     /translation="MILNEALTLGVLVLTTMMSNGGGEDIVADHVGCYGTNIYQSYGP
                     SGQYTHEFDGDELFYVDLEKKETVWRLPMFSKFESFDPQGGLRNIAVLKHNLDILIKR
                     SNSTAATKEVPEVTVFPKSPVTLGQPNLLICFVDNIFPPVIKITWLSNGHVVTEGVAE
                     TNFLPKDDHSFSKISYLTFLPSADDVYDCKVDHWGLEKPLLKHWEPEIPTPMTELTET
                     VVCALGLVVGLVGIVVGTILIIRGLRSGSVSRHQGTL"
     exon            <1..81
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /number=1
     gap             82..181
                     /estimated_length=unknown
     exon            182..431
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /number=2
     exon            851..1132
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /number=3
     exon            1371..1544
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /number=4
     exon            1729..1993
                     /gene="Loaf-DQA"
                     /allele="Loaf-DQA*01"
                     /number=5
BASE COUNT          480 a          518 c          388 g          507 t
ORIGIN      
        1 atgatcctaa atgaagctct gactctgggg gtccttgtcc tgactaccat gatgagcaac
       61 ggtggaggtg aagacattgt gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      181 ngctgaccat gttggctgct atggcacaaa catctaccag tcttatggtc ccagtggcca
      241 atacacccat gaatttgatg gagatgagct gttctacgtg gacctggaga agaaggagac
      301 tgtgtggcga ctacctatgt ttagcaaatt tgaaagtttt gacccacaag gtggactgag
      361 gaacatagct gtgctaaaac acaacttgga catcttgatt aaacgttcca actctactgc
      421 tgctaccaaa ggtatgcata caccatcccg tatctcttta ttgaatctat ccctccacac
      481 caagtctcac ttcattcttc cttagagata gatacccatc tcaccatgct atagaactct
      541 ctcctttaca aggagttccc acttcttctc atggtaattg ctgaaacctc atcatcaccc
      601 ttctcacatt cccatgtaat acaagggccc ttactgccat catgcattcc ttgcctcctt
      661 ctaggatggg tcccatagac ctcctagctt aaagaaggta cagggataaa gtgcaggcag
      721 tacacagtga ttcccaagcc aaagggaaac aaaaaccctt ccactttcag gtggagaaat
      781 attggtggga gggctccccc aagatgcaat gctattagca attcatacca gtgccatgtc
      841 ctcaccacag aggttcctga agtgactgtg tttcccaagt ctcccgtgac gctgggacag
      901 cccaacctcc tcatctgttt tgtggacaac atctttcctc ctgtaatcaa gatcacatgg
      961 ttgagcaatg ggcacgtagt cacagaaggt gttgctgaga ccaacttcct ccccaaggat
     1021 gatcactcct tctccaagat cagttacctc accttcctcc cttctgctga tgacgtttat
     1081 gactgcaagg tggaccactg gggcctggaa aagcctcttt tgaagcactg gggtatgtat
     1141 gaactccacc caattttggt ctctgttaag tccagaacat cctgcctttc agcccctaag
     1201 tctcatgacc caaaacttgt ttcccacact tcaaggtttt gaatgacaga ctttactctc
     1261 ctccctgagc ctagtgcccc aagtccttgc aaatataccc ctcatactgc tccatacaca
     1321 tgcacataaa cctactctgt attctgacct caacaacttc actttcacag aacctgagat
     1381 tccaacccct atgacagagc tgactgagac tgtggtctgt gccttgggat tggtcgtggg
     1441 cctcgtgggc atcgtggtgg gcaccatcct catcatccga ggcctacgct caggaagtgt
     1501 ctccagacac caagggacct tgtgagccgc accctacaag aaagaaaggt aagggttcag
     1561 atttgttaga gctggagccc cagtacagga ggaaagaaag ctgtaggaga actctgggga
     1621 cagtaatgtg gttgaaaagt tgtaggagga tttggaaaaa tggcattacg agggcacagg
     1681 agccccccct cccctgtacc cctcaatttc atgtatctcc tgttgcaggt acaatgtcca
     1741 tctacgagaa cagaagagga gacttgctac gtgacctagc attattttct ggccaagttc
     1801 atcatattcc ttctctcctc ctaaggctcc tcctctcact tcttttctgg gacttaaggt
     1861 gctgaatccc ctcagagctc acatgcccct ctgaattcca ccctccacca ccatatcttg
     1921 atttttttct tttctcagtt gttacctacc atgggaatcc ctgggatatt ccacctaaat
     1981 gcctaatccc tta
//