LOCUS FJ449711 6930 bp DNA linear PLN 08-JUL-2009
DEFINITION Oryza sativa Japonica Group cultivar Zhonghua 11 coiled-coil
protein (PAIR3) gene, complete cds.
ACCESSION FJ449711
VERSION FJ449711.1
KEYWORDS .
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 6930)
AUTHORS Yuan,W., Li,X., Chang,Y., Wen,R., Chen,G., Zhang,Q. and Wu,C.
TITLE Mutation of the rice gene PAIR3 results in lack of bivalent
formation in meiosis
JOURNAL Plant J. 59 (2), 303-315 (2009)
PUBMED 19392701
REFERENCE 2 (bases 1 to 6930)
AUTHORS Yuan,W. and Wu,C.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-2008) National Key Laboratory of Crop Genetics,
Huazhong Agricultural University, No. 1 Shizishan Street, Wuhan,
Hubei 430070, China
FEATURES Location/Qualifiers
source 1..6930
/organism="Oryza sativa Japonica Group"
/mol_type="genomic DNA"
/cultivar="Zhonghua 11"
/db_xref="taxon:39947"
/chromosome="10"
gene 1..6930
/gene="PAIR3"
mRNA join(1..10,1085..1166,1285..2934,3043..3190,4221..4361,
4434..4494,4587..4736,4857..4915,5434..5568,6314..6405,
6496..6930)
/gene="PAIR3"
/product="coiled-coil protein"
5'UTR join(1..10,1085..1136)
/gene="PAIR3"
CDS join(1137..1166,1285..2934,3043..3190,4221..4361,
4434..4494,4587..4736,4857..4915,5434..5568,6314..6405,
6496..6564)
/gene="PAIR3"
/codon_start=1
/product="coiled-coil protein"
/protein_id="ACN49116.1"
/translation="MEVELTNIQKATSSDYWSLASNQYPCGKFPKVSVGVTIPRTSSV
SRGRDAASTAAFEKNLSQGTDGRSRPPKMDNASLQVSPEAANHGGSAKEVPKPVPAKV
SVSQPDDNAIEQTGTFSFGTRREQDSHLDQLDRPPLVSSQGKRQVESADKNKPNSEML
RMKLWEILGGTSQNKEAVASPNPEDIETPCQPKSQIANGPSSGRQKVFTSPVPYNIKT
PAQFNSQTANKPSSDPIESDSDSPQVVEVRPITRSLGRKKEPTGSTHQDKSGSAKKPL
STHRSTPKQKILDNVFAFNDKCTPKTVGKSANGESGSLRNLRSLSRRAKVEPKKAHCS
DRISHKTTQDDMERKVPSKYIPSEKKGEKTNSFSSLSRTGKTAESCSRSPKRERRVNT
MANVGARKMQLSENLLVKTLNDGEHKLSSPQLTSFKSKGKCSSISPQQKENDNTHIPE
ASDRTAARNSFNSTPSPAANPSPVLRKYSWEHDENPAINGKSGQKDASPLADRFSDMP
DDFASPTFAANIKISPHRSKMLDDDLFSSKYPKGVNRSRSTSFTSDPESEPLDKMEKT
NELPGSESPNSQEERQNRKQPHLSPLSPIESEGAQISIPSFRKGYKSHKWLSDVDSPD
KSSIEHLGRKSHLKEGRKGKRQLTSPTHFATSGTQETMSDKEPEKVPENYLTRAFDQL
VVVLGRFQTKIKSETRNKSSKILAATGEIIRQHLEGVEGQMQADVDKLVNAGKSKRKR
LESTFEEQQEKLRILHEKFKEEVNQQLLGCKNSVEDFEAYHAELKGVADKQKASHKKL
LQNAEKTVGAQLSDAETKIAEVQKRARKRMKGLKFVLKELIAETAE"
3'UTR 6565..6930
/gene="PAIR3"
BASE COUNT 2049 a 1364 c 1393 g 2124 t
ORIGIN
1 gtcactaggg gtaagttgct gggctactta ctggactcca tgattccccc ccgtgcatgc
61 gctgcatcgt ttccacgctc cctcgtgggg ggagatttta gggttcggga gggggagttg
121 ggacctggga ctcgccctgt gcatttccgt ggcgatcgct tctgattttc gcctctgttg
181 ctatggaatt gcatatttgc ctcgttcgta aacctatcgt gtaggtttcc gttggatgat
241 tggatcctga attctgtccg attgtttttg tctctctaaa ttatggttat ctgccgcaag
301 tgttaggcta tgttagtgtc gcattccgca gtatttttca cggagttggg ttcttctaga
361 tagtgagtgg agcctggatt gtgtattatg tttgtggaag aagatctctt aatgctgagg
421 gcacatttaa attgctgata cacaatattg gtttgatatg tttgtaatgg actgttccta
481 gaatttcact gggggtacta aattgacttg ttggacatgc agtctattta atttgagcct
541 cagtgcagca gtacactgtt gcagttatca atcaaaagca agttgttagc aatcaaatca
601 tccagcttag aaatttaggt gtggtactgt ggttatgtaa tgcagctcca ccaccactgt
661 agtaatttaa agttgacagt tgtagtacaa cgatgcagtt atttgttact acttttcaat
721 gctagtttct tttccaagcg tgattgcaat attgccatgt gacaatcttt tacatgtatt
781 gcctgctgaa tcaggaaaaa gaagtacaga tgtatcacta attcacttat gctttggtag
841 gctagttgag gatcagtgtc ccttgccccc atgtcaatgc ttatttgcgg tgttttcgcc
901 cttgctgata cagctgtgct tctcacatgt gatggcagat ttgaaatttc ttcctataac
961 catgcttgat aaagatgtgc tttgcaagac ctctgtattc atttgctaag cataattttg
1021 attctgaaag attgtctcag accagtagaa tcttgtctta tgcagttgtt tttctattca
1081 ccaggtccaa ccttctttag ttaatttggt atactattat cccaaaagct gcacctatgg
1141 aagttgagct gacgaacatt cagaaagtga gtagctattt cctctgctaa gctgctggat
1201 gctttccttt ttcatgttat cctttcacct tcagatgttt tttcattata gtattaaaaa
1261 agttagcatg ttatactttt gtaggctaca tcaagtgact attggagttt ggccagcaat
1321 caatatccat gtggtaaatt ccctaaggta tcagttggcg tcacaattcc aaggacgagt
1381 tctgtatcaa gaggcagaga tgctgctagt accgctgcat ttgagaagaa cttgtctcag
1441 ggaactgatg gaagatctag acctcccaaa atggataatg cttcacttca ggtctctcca
1501 gaagcagcaa accacggcgg atctgctaaa gaggttccta aacctgtccc tgctaaggtt
1561 tctgtatcac aacctgatga taatgcaatt gagcaaacag gaaccttttc ctttggaaca
1621 agaagagaac aggacagtca tcttgatcaa ttagataggc caccacttgt gagttcccaa
1681 ggaaagcgtc aagtggaatc agctgataaa aacaagccca acagtgaaat gctcaggatg
1741 aaactgtggg agatccttgg tggtacttca caaaacaagg aggctgttgc ctcaccaaat
1801 cctgaagata ttgagacgcc atgccaacct aaaagtcaaa ttgccaatgg accatcttca
1861 ggaagacaga aggttttcac ttcacctgtt ccatataata ttaagacacc agctcagttt
1921 aatagtcaaa cagcgaacaa accatcctct gatccaattg agtcagactc cgacagtcct
1981 caagtagttg aagtaagacc tattactcgt tcgctggggc gcaagaaaga accaacaggc
2041 tccacacatc aggataagag cgggagtgca aagaaaccat tgtctactca tcgttctaca
2101 cccaagcaga aaatattgga caatgtgttt gccttcaacg ataaatgcac acctaaaaca
2161 gtaggaaaat ctgcaaatgg tgaatctggc agcttgagga atcttagaag cttgagtagg
2221 agggctaaag ttgagccaaa gaaggcacat tgttcggaca ggatttctca taagactaca
2281 caggatgata tggaaagaaa ggtaccttct aaatatatac catcagagaa aaaaggtgag
2341 aaaacaaact ccttttcttc tttatcccga acaggaaaaa ctgctgagag ttgttctaga
2401 agccctaaaa gggagagaag ggtgaacacg atggctaatg ttggggctcg aaagatgcag
2461 ttatctgaaa atttactggt caagactcta aatgatggtg aacacaagct ctcttctcct
2521 cagcttactt cctttaagag caagggaaaa tgttcttcta tatcgcctca acagaaggag
2581 aatgataata cccacatccc tgaagcttca gacagaacag cagcaagaaa tagttttaac
2641 tccacacctt ctcctgctgc taatccatct cctgtactga ggaagtactc atgggaacat
2701 gatgagaatc ctgcgataaa tggtaaatct ggacagaagg atgccagtcc gttggcagac
2761 agattcagcg acatgccaga tgattttgca agtcctactt ttgcagcaaa cataaaaata
2821 tccccccaca gaagtaaaat gctagacgat gacctattta gctccaaata tccaaaaggt
2881 gtgaacaggt caagatcaac ttcctttacc tcggatccag aatcggagcc attggtatgc
2941 ttcaatctct aaagcagatt gcaactttag taaatggttc tgtttatact ctacgtagca
3001 gagcaatttt atccgtttga cactaattgt tctactgtcc aggacaaaat ggagaaaacc
3061 aacgagttac ctggcagtga atctcctaac tctcaggagg aaagacagaa cagaaaacaa
3121 ccacatcttt cacccctttc tcctattgag agtgaagggg ctcaaatttc tattccaagc
3181 tttagaaaag gtcagaacgc catcaatgcc aattttctag gctctttatt aaaaaggggt
3241 agacatgctc ctgtcatgtt taatgcttcc attctagact caaaggtagc catgctaact
3301 tacagtgcac taccccctta ttctgcatgt ggaccatact tattggacag aaatcttatg
3361 tatatgtaat tatgtatttc aagcacctct tgaatttatc atttaggtca taggatcaac
3421 actggccata atccttataa catttgcata atctgtcaga tcaatcctgt tagtattggt
3481 gttcatgata tgtacactta ttttattggt gcaaattttg acatcgttac ttttggcctc
3541 ataaacgctc gaagtttgac tatttgaaca ttgaattcta actatactgg caagcatatt
3601 tgcagggttg ttagtggtga gattgcaaaa aagaaaaaaa atttctgtgt cacccacttc
3661 atttacttga cctttttatg acaattacac attttatgtg acatgataaa tgagtatttg
3721 tgtttgcttt tgctgtcatt ttcgattagt gctgccttac taagccgtta gatgtcttcc
3781 aggtaacctg ctattgtaac ttgtgttcac tggcctgacc gcagaaaatt tcctaaattc
3841 ctttttgtgg ctgtatagtt aggctcttca gattttcagc tatgtcttgc tgctaggtca
3901 caacattttt ttgcaactga aggatcttga aacttgaaag tgccaattca tgagagcatg
3961 ccgtttgtgt gatagctgac aagtggcata gcagcaacaa gtggcatatt ctgccatgtg
4021 caagcatatc cttagtttac atatatttca tcagaactgt ttaccatgtt aaattcgcta
4081 ttagtttagt tattcgactg tattattttc agcctttcag aacattaatt acttgagcta
4141 aagttctcat tggagatgca cacatctatc tatcttaaag ttgcttattc atgccttgtc
4201 gctttgtttt tcacatgcag gatataaatc tcataaatgg ctttcagatg ttgacagccc
4261 tgataaatct tctattgagc atctgggccg aaaatcacat ctaaaagagg gtagaaaggg
4321 caaaaggcaa ttaacttcgc caacccattt tgccacctct ggtaacactg attactttac
4381 tgttgtgctt gtgcattcat ggttttcggt ctgaccaata ttttttttct cagggacgca
4441 agaaacaatg tcagacaaag aaccagaaaa agtcccagaa aactacctaa ccaggtttga
4501 cttaggtcat tgtggcttaa atagtaggta caaacatgat tgctagtttg ctacttggat
4561 taatttcatt tcttgacttc caccagggct tttgatcagt tagtagtggt gctaggaagg
4621 ttccaaacca aaatcaagtc tgaaacaagg aataaaagtt ctaagatact tgcagctact
4681 ggagagataa tacgccagca ccttgaaggg gttgaggggc agatgcaggc tgatgtgtaa
4741 gatcgagtgc cagtgccact tagaaactgc ctcttttctt ctttatgcac atgcgattgt
4801 atataggcca gatatgtact gcctctttca tgcatggcat ttaactgtga tttcagggac
4861 aagctggtca atgcaggaaa atctaaaagg aaacgtctag agtcaacatt tgaaggtaaa
4921 actctaatca tgtcgatgca accattcata atgcaattaa tctatgaggg catgatgtgg
4981 caatattttt tatccaacta ttgtttgttg taactgtaac attttttatt ctacgtattt
5041 ggattattca tctcatgtaa cacaaactct taaatcttga ttcatcaata cagagtcatg
5101 tttgaactct agatagaatg tttgaagtct actacaggat aacaatgtaa tctgcctgtt
5161 cccttggttt ggttggctag aatgacaagt aatttgaaat ggagggaaca ttagtttgag
5221 aaaatctcat gcagtatttg tcttattctg cctgcaatca tctgatgtgg cttggacgct
5281 tggtctttat ctacttcgtt attttgatct cgtattatat actgagttaa atctcaatat
5341 gcaactgtat ataatgttac aacttctttt tccttcatgc cttgtttttc ttggatgatt
5401 ttaactattc aactgatgtc ttctggtttg cagagcaaca agaaaagtta aggattcttc
5461 acgagaagtt caaggaggag gtcaaccagc agttgctcgg ttgcaagaac tctgttgagg
5521 attttgaggc ttaccatgca gaacttaagg gagttgctga caagcaaagt aagttaaact
5581 taatacatac actatcttta tgaatgggac tgaagcaatt aaagatttct taccaatgta
5641 cacctgaaaa tcccataaaa ataatgtaca cctgaaaaaa gtctctaagg ttgcaaagcc
5701 atgttaacat tctatatact gagcctgatg aactattccc tccatctcac aacctaggag
5761 gcaccaagta agaaccaata aatgttgaga tgaccataaa tatgcctact aaatgacatg
5821 ctagacacac tctacctgtt ttacagcttt aaattagggt ataatagaaa agggtggaat
5881 atttacatta attatgaaaa gaatgtatcc cgaaaaggac gggcagtttt tgtgaaatgt
5941 aggaagtatg gttataagca tttccattgg aattctctac ttacaaattg gtaacactac
6001 atgttatcca gtcatttgta cttcaactct ttcttagtat agttaaaatc acacgtttag
6061 ttttcgtgaa aaaacctaac gaatttagtt gaaaagaatg acagcccaat cttcgtatga
6121 agtgagtttt ctgagaggtt cgccggttcc cctgcaatgg catacttgtc cagtgacata
6181 actccagctt tgatcctctc ttagcactat taggatgcaa gttatggtgt ggttaacagg
6241 acaaccactt caaggattct atttatacta ccgttcactg acccatggtg tgtgctaata
6301 tttgcatcaa cagaagcctc acacaagaag ctccttcaaa atgctgagaa gacagtcggc
6361 gctcagctga gcgacgcgga aaccaaaatc gctgaggtcc agaaggtgag ccaatgcaac
6421 ttttaaacca tcctgataag tgataaccat atatctacca aatgctcaat ctgtttttga
6481 cacgttgctt ttcagagggc acggaagagg atgaagggcc tcaaatttgt gctcaaggag
6541 ctcattgcag aaactgcaga gtaacccaac caaagttggt tcactctgca caagtacata
6601 gcaaaggtgt attgaccagg acgtacagtt tcacttacaa ataggctact gtttcattta
6661 caaagggtta aaggagaatt tacaaaaggg tacaggagaa tagtgtcaga atgcatatag
6721 gtttcttacc agatgaactt ttcacagcat acattcaagg attctattct ttccattagc
6781 atacattctt cgcctagcta tcagatagac atgcattgtt accggcgtgc cagtttgaat
6841 aatttacatt cctgagaacc gacacatttt ctgtgtactg taatcgtatt ttatgaaaat
6901 tgaaaattca taagttggaa catctactgc
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