LOCUS       CY077101                1767 bp    cRNA    linear   VRL 23-NOV-2010
DEFINITION  Influenza A virus (A/Viet Nam/1203-CIP045_RG002/2004(H5N1)) segment
            4 sequence.
ACCESSION   CY077101
VERSION     CY077101.1
KEYWORDS    .
SOURCE      Influenza A virus (A/Viet Nam/1203-CIP045_RG002/2004(H5N1))
  ORGANISM  Influenza A virus (A/Viet Nam/1203-CIP045_RG002/2004(H5N1))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Steel,J., Lowen,A.C., Pena,L., Pena,M., Solorzano,A., Albrecht,R.,
            Perez,D.R., Garcia-Sastre,A. and Palese,P.
  TITLE     Live attenuated influenza viruses containing NS1 truncations as
            vaccine candidates against H5N1 highly pathogenic avian influenza
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Steel,J., Lowen,A.C., Pena,L., Pena,M., Solorzano,A., Albrecht,R.,
            Perez,D.R., Garcia-Sastre,A. and Palese,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2010) Department of Microbiology, Mount Sinai
            School of Medicine, 1 Gustave E. Levy Pl., New York, NY 10029, USA
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Influenza A virus (A/Viet
                     Nam/1203-CIP045_RG002/2004(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/Viet Nam/1203-CIP045_RG002/2004"
                     /serotype="H5N1"
                     /host="Homo sapiens"
                     /db_xref="taxon:929709"
                     /segment="4"
                     /lab_host="MDCK1, egg passage(s)"
                     /note="Rescue of reverse genetics virus"
     misc_feature    1..1767
                     /db_xref="IRD:CEIRS-CIP045-RG002.4"
     gene            29..1723
                     /gene="HA"
     CDS             29..1723
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ADQ75462.1"
                     /translation="MEKIVLLFAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPV
                     NDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFF
                     RNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGT
                     STLNQRLVPRIATRSKVNGQSGXMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKG
                     DSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLR
                     NSPQRETRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTN
                     KVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTL
                     DFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEA
                     RLKREEISGVKLESIGIYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRICI"
     sig_peptide     29..76
                     /gene="HA"
     mat_peptide     77..1054
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1055..1720
                     /gene="HA"
                     /product="HA2"
BASE COUNT          600 a          324 c          409 g          432 t
ORIGIN      
        1 agcaaaagca ggggttcaat ctgtcaaaat ggagaaaata gtgcttcttt ttgcaatagt
       61 cagtcttgtt aaaagtgatc agatttgcat tggttaccat gcaaacaact cgacagagca
      121 ggttgacaca ataatggaaa agaacgttac tgttacacat gcccaagaca tactggaaaa
      181 gaaacacaac gggaagctct gcgatctaga tggagtgaag cctctaattt tgagagattg
      241 tagcgtagct ggatggctcc tcggaaaccc aatgtgtgac gaattcatca atgtgccgga
      301 atggtcttac atagtggaga aggccaatcc agtcaatgac ctctgttacc caggggattt
      361 caatgactat gaagaattga aacacctatt gagcagaata aaccattttg agaaaattca
      421 gatcatcccc aaaagttctt ggtccagtca tgaagcctca ttaggggtga gctcagcatg
      481 tccataccag ggaaagtcct cctttttcag aaatgtggta tggcttatca aaaagaacag
      541 tacataccca acaataaaga ggagctacaa taataccaac caagaagatc ttttggtact
      601 gtgggggatt caccatccta atgatgcggc agagcagaca aagctctatc aaaacccaac
      661 cacctatatt tccgttggga catcaacact aaaccagaga ttggtaccaa gaatagctac
      721 tagatccaaa gtaaacgggc aaagtggaan gatggagttc ttctggacaa ttttaaagcc
      781 gaatgatgca atcaacttcg agagtaatgg aaatttcatt gctccagaat atgcatacaa
      841 aattgtcaag aaaggggact caacaattat gaaaagtgaa ttggaatatg gtaactgcaa
      901 caccaagtgt caaactccna tgggggcgat aaactctagc atgccattcc acaatataca
      961 ccctctcacc attggggaat gccccaaata tgtgaaatca aacagattag tccttgcgac
     1021 tgggctcaga aatagccctc agcgggagac gcggggatta tttggagcta tagcaggttt
     1081 tatagaggga ggatggcagg gaatggtaga tggttggtat gggtaccacc atagcaatga
     1141 gcaggggagt gggtacgctg cagacaaaga atccactcaa aaggcaatag atggagtcac
     1201 caataaggtc aactcgatca ttgacaaaat gaacactcag tttgaggccg ttggaaggga
     1261 atttaacaac ttagaaagga gaatagagaa tttaaacaag aagatggaag acgggttcct
     1321 agatgtctgg acttataatg ctgaacttct ggttctcatg gaaaatgaga gaactctaga
     1381 ctttcatgac tcaaatgtca agaaccttta cgacaaggtc cgactacagc ttagggataa
     1441 tgcaaaggag ctgggtaacg gttgtttcga gttctatcat aaatgtgata atgaatgtat
     1501 ggaaagtgta agaaatggaa cgtatgacta cccgcagtat tcagaagaag cgagactaaa
     1561 aagagaggaa ataagtggag taaaattgga atcaatagga atttaccaaa tactgtcaat
     1621 ttattctaca gtggcgagtt ccctagcact ggcaatcatg gtagctggtc tatccttatg
     1681 gatgtgctcc aatgggtcgt tacaatgcag aatttgcatt taaatttgtg agttcagatt
     1741 gtagttaaaa acacccttgt ttctact
//