LOCUS CY077099 2341 bp cRNA linear VRL 23-NOV-2010
DEFINITION Influenza A virus (A/Viet Nam/1203-CIP045_RG003/2004(H5N1)) segment
1 sequence.
ACCESSION CY077099
VERSION CY077099.1
KEYWORDS .
SOURCE Influenza A virus (A/Viet Nam/1203-CIP045_RG003/2004(H5N1))
ORGANISM Influenza A virus (A/Viet Nam/1203-CIP045_RG003/2004(H5N1))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2341)
AUTHORS Steel,J., Lowen,A.C., Mubareka,S. and Palese,P.
TITLE Transmission of influenza virus in a mammalian host is increased by
PB2 amino acids 627K or 627E/701N
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2341)
AUTHORS Steel,J., Lowen,A.C., Mubareka,S. and Palese,P.
TITLE Direct Submission
JOURNAL Submitted (23-NOV-2010) Department of Microbiology, Mount Sinai
School of Medicine, 1 Gustave E. Levy Pl., New York, NY 10029, USA
FEATURES Location/Qualifiers
source 1..2341
/organism="Influenza A virus (A/Viet
Nam/1203-CIP045_RG003/2004(H5N1))"
/mol_type="viral cRNA"
/strain="A/Viet Nam/1203-CIP045_RG003/2004"
/serotype="H5N1"
/host="Homo sapiens"
/db_xref="taxon:929710"
/segment="1"
/lab_host="MDCK passage(s)"
/note="Rescue of reverse genetics virus in BSL3."
misc_feature 1..2341
/db_xref="IRD:CEIRS-CIP045-RG003.1"
gene 28..2307
/gene="PB2"
CDS 28..2307
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="ADQ75460.1"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITADKRIIEMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRN
GPATSAVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRATVSADP
LASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTS
GSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDQQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IEPIDNVMGMIGILPDMTPSTEMSLRGVRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQ
DPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEG
TAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
BASE COUNT 775 a 441 c 604 g 521 t
ORIGIN
1 agcgaaagca ggtcaaatat attcaatatg gagaggataa aagaattacg agatctaatg
61 tcacagtccc gcactcgcga gatactaaca aaaaccactg tggaccatat ggccataatc
121 aagaaataca catcaggaag acaagagaag aaccctgctc tcagaatgaa atggatgatg
181 gcaatgaaat atccaatcac agcggacaag agaataatag agatgattcc tgaaaggaat
241 gaacaagggc agacgctctg gagcaagaca aatgatgctg gatcggacag ggtgatggtg
301 tctcccctag ctgtaacttg gtggaatagg aatgggccgg cgacaagtgc agttcattat
361 ccaaaggttt acaaaacata ctttgagaag gttgaaagat taaaacatgg aaccttcggt
421 cccgttcatt tccgaaacca ggttaaaata cgccgccgag ttgatataaa tcctggccat
481 gcagatctca gtgctaaaga agcacaagat gtcatcatgg aggtcgtttt cccaaatgaa
541 gtgggagcta gaatattgac atcagagtcg caattgacaa taacgaaaga gaagaaagag
601 gagctccaag attgtaagat tgctccctta atggttgcat acatgttgga aagggaactg
661 gtccgcaaaa ccagattcct accggtagca ggcggaacaa gtagtgtgta cattgaggta
721 ttgcatttga ctcaagggac ctgctgggaa cagatgtaca ctccaggcgg agaagtgaga
781 aatgacgatg ttgaccagag tttgatcatt gctgccagaa acattgttag gagagcaaca
841 gtatcagcgg atccactggc atcactgctg gagatgtgtc acagcacaca aattggtggg
901 ataaggatgg tggacatcct taggcaaaat ccaactgagg aacaagctgt ggatatatgc
961 aaagcagcaa tgggtcttag gatcagttct tcctttagct ttggaggctt cactttcaaa
1021 agaacaagtg gatcatccgt caagaaggaa gaggaagtgc ttacaggcaa cctccaaaca
1081 ttgaaaataa gagtacatga ggggtatgag gaattcacaa tggttgggcg gagggcaaca
1141 gctatcctga ggaaagcaac tagaaggctg attcagttga tagtaagtgg aagagaccaa
1201 caatcaatcg ctgaggcaat cattgtagca atggtgttct cacaggagga ttgcatgata
1261 aaggcagtcc gaggcgatct gaatttcgta aacagagcaa accaaagatt aaaccccatg
1321 catcaactcc tgagacattt tcaaaaggac gcaaaagtgc tatttcagaa ttggggaatt
1381 gaacccattg ataatgtcat ggggatgatc ggaatattac ctgacatgac tcccagcaca
1441 gaaatgtcac tgagaggagt aagagttagt aaaatgggag tggatgaata ttccagcact
1501 gagagagtag ttgtaagtat tgaccgtttc ttaagggttc gagatcagcg ggggaacgta
1561 ctcttatctc ccgaagaggt cagcgaaacc cagggaacag agaaattgac aataacatat
1621 tcatcatcaa tgatgtggga aatcaacggt cctgagtcag tgcttgttaa cacctatcag
1681 tggatcatca gaaactggga gactgtgaag attcaatggt ctcaagaccc cacgatgctg
1741 tacaataaga tggagtttga accgttccaa tccttggtac ccaaagctgc cagaggtcaa
1801 tacagtggat ttgtgagaac attattccag caaatgcgtg acgtactggg gacatttgat
1861 actgtccaga taataaagct gctaccattt gcagcagccc caccggagca gagcagaatg
1921 cagttttctt ctctaactgt gaatgtgaga ggctcaggaa tgagaatact cgtaaggggc
1981 aattcccctg tgttcaacta caataaggca accaaaaggc ttaccgtcct tggaaaggac
2041 gcaggtgcat taacagagga tccggatgaa gggacagccg gagtggagtc tgcagtactg
2101 aggggattct taattttagg caaggaggac aaaaggtatg gaccagcatt gagcatcaat
2161 gaactgagca atcttgcgaa gggggagaaa gctaatgtgc tgatagggca aggagacgtg
2221 gtgttggtaa tgaaacgaaa acgggactct agcatactta ctgacagcca gacagcgacc
2281 aaaagaattc ggatggccat caattagtgt cgaattattt aaaaacgacc ttgtttctac
2341 t
//