LOCUS CY077097 890 bp cRNA linear VRL 23-NOV-2010 DEFINITION Influenza A virus (A/Puerto Rico/8-CIP045_RG83841/1934(H1N1)) segment 8 sequence. ACCESSION CY077097 VERSION CY077097.1 KEYWORDS . SOURCE Influenza A virus (A/Puerto Rico/8-CIP045_RG83841/1934(H1N1)) ORGANISM Influenza A virus (A/Puerto Rico/8-CIP045_RG83841/1934(H1N1)) Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 890) AUTHORS Gack,M.U., Albrecht,R.A., Urano,T., Inn,K.-S., Huang,I.-C., Carnero,E., Farzan,M., Inoue,S., Jung,J.U. and Garcia-Sastre,A. TITLE Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I JOURNAL Unpublished REFERENCE 2 (bases 1 to 890) AUTHORS Gack,M.U., Albrecht,R.A., Urano,T., Inn,K.-S., Huang,I.-C., Carnero,E., Farzan,M., Inoue,S., Jung,J.U. and Garcia-Sastre,A. TITLE Direct Submission JOURNAL Submitted (23-NOV-2010) Department of Microbiology, Mount Sinai School of Medicine, 1 Gustave L. Levy Pl., New York, NY 10029, USA FEATURES Location/Qualifiers source 1..890 /organism="Influenza A virus (A/Puerto Rico/8-CIP045_RG83841/1934(H1N1))" /mol_type="viral cRNA" /strain="A/Puerto Rico/8-CIP045_RG83841/1934" /serotype="H1N1" /host="Homo sapiens" /db_xref="taxon:929707" /segment="8" /lab_host="MDCK1/E1 passage(s)" /note="Derived from Mount Sinai strain of A/PR/8/34: RG 293T rescue" misc_feature 1..890 /db_xref="IRD:CEIRS-CIP045-RG83841.8" gene 27..864 /gene="NEP" /gene_synonym="NS2" CDS join(27..56,529..864) /gene="NEP" /gene_synonym="NS2" /note="nonstructural protein 2" /codon_start=1 /product="nuclear export protein" /protein_id="ADQ75457.1" /translation="MDPNTVSSFQDILLRMSKMQLESSSGDLNGMITQFESLKLYRDS LGEAVMRMGDLHSLQNRNEKWREQLGQKFEEIRWLIEEVRHKLKITENSFEQITFMQA LHLLLEVEQEIRTFSFQLI" gene 27..719 /gene="NS1" CDS 27..719 /gene="NS1" /codon_start=1 /product="nonstructural protein 1" /protein_id="ADQ75456.1" /translation="MDPNTVSSFQVDCFLWHVRKRVADQELGDAPFLDRLRADQASLR GRGSTLGLDIETATRAGKQIVERILKEESDEALKMTMASVPASRYLTDMTLEEMSRDW SMLIPKQKVAGPLCIRMDQAIMDKNIILKANFSVIFDRLETLILLRAFTEEGAIVGEI SPLPSLPGHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQRFAWRSSNENGRPPLTPKQ KREMAGTIRSEV" BASE COUNT 280 a 181 c 219 g 210 t ORIGIN 1 agcaaaagca gggtgacaaa gacataatgg atccaaacac tgtgtcaagc tttcaggtag 61 attgctttct ttggcatgtc cgcaaacgag ttgcagacca agaactaggt gatgccccat 121 tccttgatcg gcttcgcgca gatcaggcta gcctaagagg aaggggcagc accctcggtc 181 tggacatcga gacagccaca cgtgctggaa agcagatagt ggagcggatt ctgaaagaag 241 aatccgatga ggcacttaaa atgaccatgg cctctgtacc tgcgtcgcgt tacctaactg 301 acatgactct tgaggaaatg tcaagggact ggtccatgct catacccaag cagaaagtgg 361 caggccctct ttgtatcaga atggaccagg cgatcatgga taagaacatc atactgaaag 421 cgaacttcag tgtgattttt gaccggctgg agactctaat attgctaagg gctttcaccg 481 aagagggagc aattgttggc gaaatttcac cattgccttc tcttccagga catactgctg 541 aggatgtcaa aaatgcagtt ggagtcctca tcgggggact tgaatggaat gataacacag 601 ttcgagtctc tgaaactcta cagagattcg cttggagaag cagtaatgag aatgggagac 661 ctccactcac tccaaaacag aaacgagaaa tggcgggaac aattaggtca gaagtttgaa 721 gaaataagat ggttgattga agaagtgaga cacaaactga agataacaga gaatagtttt 781 gagcaaataa catttatgca agccttacat ctattgcttg aagtggagca agagataaga 841 actttctcgt ttcagcttat ttaataataa aaaacaccct tgtttctact //