LOCUS CY076752 2307 bp cRNA linear VRL 15-MAY-2012
DEFINITION Influenza A virus (A/Ontario/142358/2009(H1N1)) segment 1 sequence.
ACCESSION CY076752
VERSION CY076752.2
DBLINK BioProject: PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Ontario/142358/2009(H1N1))
ORGANISM Influenza A virus (A/Ontario/142358/2009(H1N1))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2307)
AUTHORS Alexander,D.C., Winter,A.L., Eshaghi,A., Dooling,K., Frenette,C.,
de Villa,E., Varia,M., Marchand-Austin,A., Jamieson,F. and
Gubbay,J.B.
TITLE Transmission of Influenza A Pandemic (H1N1) 2009 Virus in a
Long-Term Care Facility in Ontario, Canada
JOURNAL Infect Control Hosp Epidemiol 31 (12), 1300-1302 (2010)
PUBMED 21029007
REFERENCE 2 (bases 1 to 2307)
AUTHORS Alexander,D.C., Eshaghi,A., Jamieson,F. and Gubbay,J.B.
TITLE Direct Submission
JOURNAL Submitted (08-NOV-2010) Public Health Laboratories - Toronto,
Ontario Agency for Health Protection and Promotion, 81 Resources
Road, Toronto, Ontario M9P 3T1, Canada
COMMENT On May 15, 2012 this sequence version replaced CY076752.1.
FEATURES Location/Qualifiers
source 1..2307
/organism="Influenza A virus
(A/Ontario/142358/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/Ontario/142358/2009"
/serotype="H1N1"
/isolation_source="nasopharyngeal swab"
/host="human; gender M; age 1"
/db_xref="taxon:911557"
/segment="1"
/lab_host="MDCK1 passage(s)"
/country="Canada: Ontario"
/collection_date="27-May-2009"
/note="lineage=swl"
gene 12..2291
/gene="PB2"
CDS 12..2291
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="ADP95338.1"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMRYPITADKRIMDMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLAITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADP
LASLLEMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTS
GSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IESIDNVMGMIGILPDMTPSMEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQ
DPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEG
TSGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
BASE COUNT 780 a 434 c 589 g 504 t
ORIGIN
1 atatattcaa tatggagaga ataaaagaac tgagagatct aatgtcgcag tcccgcactc
61 gcgagatact cactaagacc actgtggacc atatggccat aatcaaaaag tacacatcag
121 gaaggcaaga gaagaacccc gcactcagaa tgaagtggat gatggcaatg agatacccaa
181 ttacagcaga caagagaata atggacatga ttccagagag gaatgaacaa ggacaaaccc
241 tctggagcaa aacaaacgat gctggatcag accgagtgat ggtatcacct ctggccgtaa
301 catggtggaa taggaatggc ccaacaacaa gtacagttca ttaccctaag gtatataaaa
361 cttatttcga aaaggtcgaa aggttgaaac atggtacctt cggccctgtc cacttcagaa
421 atcaagttaa aataaggagg agagttgata caaaccctgg ccatgcagat ctcagtgcca
481 aggaggcaca ggatgtgatt atggaagttg ttttcccaaa tgaagtgggg gcaagaatac
541 tgacatcaga gtcacaactg gcaataacaa aagagaagaa agaagagctc caggattgta
601 aaattgctcc cttgatggtg gcgtacatgc tagaaagaga attggtccgt aaaacaaggt
661 ttctcccagt agccggcgga acaggcagtg tttatattga agtgttgcac ttaacccaag
721 ggacgtgctg ggagcagatg tacactccag gaggagaagt gagaaatgat gatgttgacc
781 aaagtttgat tatcgctgct agaaacatag taagaagagc agcagtgtca gcagacccat
841 tagcatctct cttggaaatg tgccacagca cacagattgg aggagtaagg atggtggaca
901 tccttagaca gaatccaact gaggaacaag ccgtagacat atgcaaggca gcaatagggt
961 tgaggattag ctcatctttc agttttggtg ggttcacttt caaaaggaca agcggatcat
1021 cagtcaagaa agaagaagaa gtgctaacgg gcaacctcca aacactgaaa ataagagtac
1081 atgaagggta tgaagaattc acaatggttg ggagaagagc aacagctatt ctcagaaagg
1141 caaccaggag attgatccag ttgatagtaa gcgggagaga cgagcagtca attgctgagg
1201 caataattgt ggccatggta ttctcacaag aggattgcat gatcaaggca gttaggggcg
1261 atctgaactt tgtcaatagg gcaaaccagc gactgaaccc catgcaccaa ctcttgaggc
1321 atttccaaaa agatgcaaaa gtgcttttcc agaactgggg aattgaatcc atcgacaatg
1381 tgatgggaat gatcggaata ctgcccgaca tgaccccaag catggagatg tcgctgagag
1441 ggataagagt cagcaaaatg ggagtagatg aatactccag cacggagaga gtggtagtga
1501 gtattgaccg atttttaagg gttagagatc aaagagggaa cgtactattg tctcccgaag
1561 aagtcagtga aacgcaagga actgagaagt tgacaataac ttattcgtca tcaatgatgt
1621 gggagatcaa tggccctgag tcagtgctag tcaacactta tcaatggata atcaggaact
1681 gggaaattgt caaaattcaa tggtcacaag atcccacaat gttatacaac aaaatggaat
1741 ttgaaccatt tcagtctctt gtccctaagg caaccagaag ccggtacagt ggattcgtaa
1801 ggacactgtt ccagcaaatg cgggatgtgc ttgggacatt tgacactgtc caaataataa
1861 aacttctccc ctttgctgct gctccaccag aacagagtag gatgcaattt tcctcattga
1921 ctgtgaatgt gagaggatca gggttgagga tactggtaag aggcaattct ccagtattca
1981 attacaacaa ggcaaccaaa cgacttacag ttcttggaaa ggatgcaggt gcattgactg
2041 aagatccaga tgaaggcaca tctggggtgg agtctgctgt cctgagagga tttctcattt
2101 tgggcaaaga agacaagaga tatggcccag cattaagcat caatgaactg agcaatcttg
2161 caaaaggaga gaaggctaat gtgctaattg ggcaagggga cgtagtgttg gtaatgaaac
2221 gaaaacggga ctctagcata cttactgaca gccagacagc gaccaaaaga attcggatgg
2281 ccatcaatta gtgtcgaatt gtttaaa
//