LOCUS BR000314 5000 bp DNA linear PLN 19-FEB-2008
DEFINITION TPA_inf: Oryza sativa Japonica Group OsRR5 gene for A-type
response regulator, complete cds.
ACCESSION BR000314
VERSION BR000314.1
KEYWORDS Third Party Data; TPA; TPA:inferential.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 5000)
AUTHORS Ito,Y. and Kurata,N.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Yukihiro Ito
National Institute of Genetics, Plant Genetics Laboratory; Yata
1111, Mishima, Shizuoka-ken 411-8540, Japan
REFERENCE 2
AUTHORS Ito,Y. and Kurata,N.
TITLE Identification and characterization of cytokinin-signalling gene
families in rice
JOURNAL Gene 382, 57-65 (2006)
COMMENT
PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-5000 AL663010.4 85001-90000
2844-3039 AK106426.1 1-196
3117-3163 AK106426.1 197-243
3266-3343 AK106426.1 244-321
3455-3525 AK106426.1 322-392
3615-4063 AK106426.1 393-839
FEATURES Location/Qualifiers
source 1..5000
/chromosome="4"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
CDS join(2919..3039,3117..3163,3266..3343,3455..3525,
3615..3702)
/codon_start=1
/gene="OsRR5"
/product="A-type response regulator"
/protein_id="FAA00266.1"
/transl_table=1
/translation="MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAV
DSGKRALELLGSEPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVST
RINRCLEEGAEDFLLKPVQPSDVSRLCSRVLR"
BASE COUNT 1257 a 1176 c 1214 g 1353 t
ORIGIN
1 tcaagatacg gtgccagtgt accgcagata ggattttttt ttatcttcta ctagtattat
61 atgtttaggc ttaggtgaga aatatttact tcgaacatgt ctgattttgt agcatcaagt
121 actgtgtttc tgtccttgat gctctatcca tttctgtctt tccaagagtt attaacatcc
181 aactatcgga gattcgctac ataatctcag tttggaagta aatatactag cgtatcacta
241 gtggcgagcg tatcactatc tttcacggtt taactatacg taatctctca gtttggaagt
301 aaatagtgac atgaactcgg ctcttcaatt tatacgcatg ctcatgatta tggcaggaag
361 ttgtctctgg cctgtcgcta gctcgtgatg agatacggcg tatccgcgag atacaccgta
421 taatcaagtg aaagcgcagt acctcaatta actgacgcac agcaccgcaa aatcgctcag
481 atacgtacag tactccagaa tgcatgtacg tacaccccga catgcatgta cgtactggcg
541 tactgcagaa tggatgtcaa tctgtcatcc acagccaatc tacctcctga ctgcctcgaa
601 ggtgacgaaa gaatctctga agcaacttga taagcagaga catcgttttc tctgggctgg
661 cacaggcgat atcactgggg gaaaatgcaa ggtcaattgg acaaagacat gcttgccgac
721 tagccaggga ggcttgggag tcctgaacct agaaaaattc acaagggcct tgagactgcg
781 atggctttgg cacgaatgga aagatccgaa caagccgtgg gtgggtttgg acacgccttg
841 tgatgaaatc gacaaagacc tcttcgctgc ctcaacaaag ataaccgtcg gtgatgggaa
901 tatgacacgc ttctgggatt ccacttggat tgatgggcgc aggccaaaag atcttatgcc
961 gttggtctac gcgatctcca aaaataggaa aaagtcccta caccaaggga aagaggacga
1021 cacatgggtg gatgacctga tctttgacgc aggctcaacc atcacagtca acctagtgga
1081 acagctggtc cgcttgtggg aagcggtccg gaatgtgcag ttagtcagtg aagagccaga
1141 tcagattgtt tggaaattca caggcaatgg ccattataca gcctcttcgg cctatcatgc
1201 acagtgcttg gaggcgccaa gtacaaacct caactctttg atttggaaag catgggcccc
1261 ggggaaatgc aaattctatg tctggctcat catccagaat agagtctgga cgtccgaccg
1321 acttgcaata agaggttggc agaacaacgg ccattgccct ctctgtcgtt gcgaagctga
1381 gacgggattg catcttgtcg ccacatgcag atacacaaag agaatctggc accacgttgc
1441 cggatgggtg ggatatcatc aattggagcc gtcccagtgg gaggaagccc agtcagtctg
1501 ccaatggtgg gaaagcctag caaatactcc caacatccca aaaaagggtc ttcggtccct
1561 catcctacta gtagtctggg aaatctggaa ggagagaaat cggcggattt tcgataacaa
1621 agagatggcg gtaggccttc tcctagcaaa aataaaagag gaggctagcg tgtgggcctt
1681 agcaggggca aaaagattgc gcgatttcgt cccacgcatt gtatagttta taacttaaag
1741 tcttttttac tttaccctta agggttatat tttcttcttc tatattcaat gaaaaggcgc
1801 actcttatcc cgttttccgt tcaaaaaaaa aatctgtcat ccacatattc acctcctcag
1861 ccgactactc catgtacata cgtacggaca tacggtgtat ttataggctt ccaataaatg
1921 agcaaacctg ctactgctag tactcagtgc tacgacactg ctactacaac cttcatacga
1981 ggcgatatac tgtatgtaca caactgttac agagtacaga gggaccgatg atcagtaatt
2041 gtaaagcaga tccagtacgg cactgtatac agtactcgtg tatacagtat acagtagtat
2101 cagacagtag ttctgcaaga gaaaaataaa gcgtacagta tctatacacg ggtatcgtaa
2161 tgaaactatc attataaaca ttaatacgga gtacgtgtat ggtaatagaa gcatgggacc
2221 tatacaccag ttgattataa tgacagtgat attatggtgg atgatcctca ccccgtatac
2281 acaggatgct ttgatgcaga tggagctcat ttaagagaga tgatacggtg gcgccggtga
2341 ccgagccagc cagcccggcc gtccgtgcca ggcaggcatg caggatgcgc gaggcgagtt
2401 aaatacgagc accactgttg gaagcgacaa aagatacggt ccgctgctgg ctgcctggtc
2461 gctcacgcgc gcacgccccc gagccgtagc cctcattggt acgtggcctc gtggatccac
2521 tgcactttgt tgcacggttc gcaccccacc ccggcgcgcg cggcgatgcg tcacgctttg
2581 cttattggga gcgcgcgggg tcggggatac gggccgtatc agatccgcgc cgcggccgta
2641 tcgatatctc ttggattcac tagcgtagct agctagctag ctctcgccca acctgcctcc
2701 ctggcggccg cgatatcgat cactctcggt gggcgcgccg ggcgatcgat cccctcgtct
2761 ccgctccttg acgtcgtctt ctctccccat ctcgcacgca cgggcgcctc tatataaggc
2821 gcaccacacg tccagtacct tccacggtca cacacagaat tcctaaagcc gacttggctt
2881 ttgctcgcga gtaggactgt aggagagata tcgatctgat ggccacctgc aggagccgtg
2941 gcgtcgagag gggcggcgcg ccgcacgtcc tcgcggtgga cgacagctcc gtggaccgcg
3001 ccgtcatctc cggcatcctc cggagctctc agttccgcgg tgagctgctg gctctcttgc
3061 tcctgtacca catattgtcc atcctcgttc ttcttcttac gtgtgcatgt gtgtagtgac
3121 ggctgtggac agcgggaaga gggcattgga gctgctaggc tcggtgagtc tccggcatcc
3181 tctgcctttt tgctgttggt tacgcaaatg tggaggtgtg ttttgcctgc gaggccgtaa
3241 acgttttttt ttctttggct cgcaggaacc gaatgtgagc atgattatca ctgactactg
3301 gatgccggag atgaccgggt atgaactcct gaagaaggtc aaggtaatcc ggtgatatca
3361 ccaccgttat ttgggccaac ttccatagta ctcctcgtgc atattactac tcaccttttc
3421 tgatttgaca atagaaaatg gcatatcttt gcaggagtcg tccaggctga aggagatccc
3481 tgtggtgatc atgtcctcgg agaacgtctc tacaaggatc aacaggtttg tgtgcacagt
3541 atcggtgccc atatctgccc aaatactatc aagatatact catcttcttg acacgttttt
3601 ggttaatttg ccaggtgctt ggaggaagga gcggaggatt tcttgctgaa gcccgtgcag
3661 ccgtcggacg tgtcgcggct gtgcagccgc gtcctccggt gagccgtgca ggcggcggcc
3721 ggtcgggtgg gcgtcgtggg cgactgaagc gtccctgcat gcatatgcgg cttcagtgtt
3781 ttgggggttg gaattaatag cagcagaagc agaagcagta gtagtagtga ttagtggtag
3841 ccaaacgcac tgtgcgcttg cagatgttgt ggttaatggg ctgaatttgc ctctcccttt
3901 ctctattttt ctcattccga atgtcatgtt ctagctgttc cctgtgtcga tctagaatgc
3961 agtttgtccc atcggtttgt ccatcccagt tgaaaaacct gttgcaacaa atgtctcaat
4021 tttatgttct taacagttca tccgttttac tagttatatt catttctttc tcctgtcaac
4081 tgttggattg catttggcag aggatcatcg gccacattta ctcgttgttc tgtgagatat
4141 gaatgtagta gtactgtttg cccaaacctt cggtgaaatt acggaacagt gacaaccgtt
4201 ggattgcaca tttgattact acagtgccta caggtccctg gttgtatagt acgctcgtat
4261 ttgctcattt acgtgccgtt tttggaaaca tgtccttgaa ggtgaaatgg atgcactgct
4321 cctactgtcc tggggccgca ctatcttgga gcaggccaga ttgtctgttc agacagttct
4381 gtaaaatggc acgccagaaa aaacaattaa actcgggtta ttaatgcctt cttttagagg
4441 gagatggtta attggtgatc agggcatgtg caggctgtgc gtttgctggc cgggggccgt
4501 gcgtttgcgc ggacgtgcca gctccgtttc tcccacatgc ccgtgggagc tgggagctga
4561 cgtgtctgcc cagtacgtgt ttcaatttaa ttttcaaaat ttccattcaa aattcaaaac
4621 acttaactta aatttagaaa actttcaaca taattttcaa aacttccatt caaaattcaa
4681 aacacttaac ttaaatttag aaaactttca acataaaatt caaagcttga attaatcttg
4741 accttaaagt tttcaaatat taacttaaaa gttttcaatt gtaagttaaa agttttaaat
4801 ttgagtcaaa agttttcaaa ttgagtcgag cttttaaatt cgatttaaaa aattttcaaa
4861 tctaagttga aagtttttaa atttgaatat aaaactttca aatcttaagt caaaagtttt
4921 caaaatttcg tcatccacca tcgagctcct ctattcctcc ccgtggtcgc cggtaagctc
4981 atccccgtgg tcatggtgcc
//