LOCUS BR000254 9000 bp DNA linear PLN 19-FEB-2008
DEFINITION TPA_exp: Oryza sativa Japonica Group ORR5 gene for response
regulator, complete cds.
ACCESSION BR000254
VERSION BR000254.1
KEYWORDS Third Party Data; TPA; TPA:experimental.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 9000)
AUTHORS Ito,Y. and Kurata,N.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Yukihiro Ito
National Institute of Genetics, Plant Genetics Laboratory; Yata
1111, Mishima, Shizuoka-ken 411-8540, Japan
REFERENCE 2
AUTHORS Ito,Y. and Kurata,N.
TITLE Identification and characterization of cytokinin-signalling gene
families in rice
JOURNAL Gene 382, 57-65 (2006)
COMMENT
PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-9000 AP004008.3 102001-111000
6610-6840 CF323912.1 9-239
7462-7813 CF323912.1 240-594
FEATURES Location/Qualifiers
source 1..9000
/chromosome="6"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
CDS join(2967..3090,3192..3344,4787..5137,5233..5309,
5523..6840,7462..7511)
/codon_start=1
/gene="ORR5"
/product="response regulator"
/protein_id="FAA00258.1"
/transl_table=1
/translation="MAATQATAARKFPEGLRVLAVDDSPVCLMLLEALLRRCKYQPTM
TRDAATALRMLRERPGDFDLVISDVHMLDMDGFKLLELIGLEMDLPVIMQSANGELET
MMKGVTHGACDYLVKPVSLKDIQNIWQHVWRKRKLDIRNHNGGYNDGGELVGATRTKR
KYTRKMRNDGDNYGENKENMDSTLKRQRVVWTPELHRDFVIAVHELGVDRAVPRKILR
MMKVDYMTRENIASHLQKYRLYLKRISTQTGMDPDQFPEKWKYMNELDALKNYCENGR
YRLTPAIASSSSSNPFARMNSASALATNGFLPTHSVQLKNSQRNMAMGTVGHGGSPGN
NPVFQPLQNSSNARKCFPSGPSGSSFANISNGLVLDTDDSGSSYAGMFCKSMWETSNG
SPSCHSGNSSANKSNNGVSAPANQFQVQSKFGFSALANQFPVQSNCGFSAPANQYQVQ
SNGGFSVPANQFPVQSNGEFLAPTNQFPVQYPEVNNQPLVQMNQSSTNHFSTIGNDYQ
FPDLANCSKYWQPTAPSMFPDLGHNDGTSFRPSQANIANINQLSSFAASSGQEPMFGD
ELHGQMSPIMSTISLSDFDDQMGSFNIGNDTSPAEMMHDNFSLGSDSNISSSTPTDSS
FGSTFPDFHLDSPEMPAQMLNGGDEDGILLPVLDDTVDQQDLFDQLDENNGNFQSNSV
VKALVFAS"
BASE COUNT 2616 a 1680 c 1818 g 2886 t
ORIGIN
1 ggggtttccc ccttgaggtt tgctcttcct gattcttact acatcttata tacttaaatc
61 ttaccttaca ctaaatttga gataggcagc tttcttatcc ttcccaacat tagttctaca
121 tgtatcacca tttttttttc agaattaagg acctgaaaag aaacattgtt attattattt
181 tcttgtaaga aaataccaat aacttactgg ttatgtatag tccatttaag tactttagtc
241 ctcaaagtgt catactgtga atcaaggggt aacttcattg gaagtctaat acatgtcgtt
301 gtgtgcttca aaacacaatt tacatgtcct ctaagagaat gcacattgct atctttatcg
361 caggtccaag ataaccagag cgaccacaac aacgtgatag gcacactgcc ctagctcaaa
421 gcgaaccaga atgcaaaata agatctccta ggtcttgcaa acctgcttct gtctcatttc
481 atcaacttgt aattttgtgt ctcttatttg tatttcttta tgaatatcaa ggtcccaagt
541 tagatcaagt aagcataaac aatttttcat gccaacatgt tcaaaaattt tgcacggtct
601 agttctttac aacattttgc aagttttttt tccccttttg acagagaaaa ttcctgttca
661 tattgaaagc aattagtatt aaaaagtaca aacacgggtg attgaccatg caaggccagc
721 tgaaataaac cacaaaagga caatccctat tataccggtg actaaataac atttgattta
781 attgcattaa ataatatatg caagacttga gaagtaaaaa aacaagtcat ttatttgaac
841 tcttctatgt gaaactgtgt gctcaccaat tgaaatctac gtgcttttat tggaatacaa
901 ataaacatct cgtgttcagt ttagcacgaa aatcgtttat ttattgacgt attcacggct
961 tcatgccatg ccacagtgat atctatattt tttttatagt agaagaatat cattctttga
1021 gggcttcttt ggttgtatgc cacacattcc ctaagcctta ggtgtgttac aatttattgg
1081 gttagtgttt gatttattat tgtaattatg gcaagccaca ttttgttact tcaaatgtca
1141 tacacacaaa attcatagca aaacattctc acccttatgg ctaataaaac aatggtcaca
1201 cttcgtgagt ttgtgtggca agtcacactt gtaaaaaaat gagttatgac aaggttaggt
1261 tataaccaaa catgccctta atctctatat cacaaaacct ctaaatacta gctaaagtca
1321 ttcaacttgg aacctgtatt tgctaaataa atgaacaaaa acttatgtaa cactcataat
1381 ctaatagata aatctaaaac tacattagca ttgtttatta tacaataagc tcatcgaaaa
1441 atcattaaat atcaaccaca tgctcctact tctatggaaa ttgattcctc tcgaatcata
1501 gattcactaa atagaacatt caaaataatc aaataataat ggcatgctat tgaaaaatgt
1561 attgaccaca tttactcttt attctacagc aatgcaaaca cgagaacatt aaattataac
1621 aacatgcttc tacttgtatt taacaaatct ctgattcaag cggaattact tatcatagac
1681 cttgccaccg tgctagtgtg agtaacattt attatccaac aaatacaacg gaagctttaa
1741 ataatcattt tgttagtatc atagtgctag tatcatcatt ttgctgtatt tatagcgtaa
1801 caaatacaac aaaagtttca aataatatac actagtacca tcattgtcac caatgaatta
1861 attgaaagcc agccacacta gagatggttt tcaactatag cacacatgga gtaagagcat
1921 ttaactattt accattattt ggcaatcata tctaaataac gacaaactat tgaaagtcaa
1981 agaaagtgac atgttattgg gaccgacaga aagtaatttt gcttaaaccc aaaattcacc
2041 aaagagaaac ataaaaccac actagtaaaa tgtatataaa aaaattaaac ccaagggaag
2101 agacgttcta aatacattgc tttaagataa aaaaaaaatc cctaaaagcc ggttagatgc
2161 accctatcac cttagctaca tgccacgacc acggaaaaca catagcgatg gacctttttt
2221 ttttgcgtga gccagtagtg attgagccct cgtcagcggc ctcactcgtt gggatcttac
2281 catcgtgcta tgaacaacat atataattca acaaatacaa taaatgattt ttatattata
2341 cacctagctt catcatttat gaaaaccagc aaaaccagat gtggttttca actgtagccc
2401 atagaaaaag ggcatttaaa catttaccaa tattcggtgc acacacattt actcctcgca
2461 tcaaggctct cgcaaaagtg ggaagaacag tccaatagaa catcaaccag tgaagtgtta
2521 gtggcagcgg aagaagaaac atgcatgcaa caatagtcag gaatttaaag ctagggattt
2581 gcacgcacac aggccaaaat accttccaaa tttctctgcg agggagcgcg tgaattccac
2641 ccccatctac tgtcctgatc ctctcctctc ctcgtcgata taaatgacgc cctccccctc
2701 gctgttgcac ccatccctct ctgacctcga gttgcagctt cttgtgctgt tttgagccag
2761 cattcgaggg aacccatcgg aaaagatctg aaaggtgggg gttctaggag ggtttcttgg
2821 tgttcttgta ttggttttgg tgggttcttg ctgggggtgc ggagggggag ggagattttg
2881 gtggtcagtc gttcgtccag attggggttt tcttgttgct gatcgtgttt gttttttttt
2941 ttaccaaggg gatccaaggg acgaacatgg cggcgacgca ggcgacggcc gccagaaaat
3001 tcccagaggg tttgcgcgtg cttgccgtcg acgatagccc cgtttgcctc atgctcctgg
3061 aggcgttgct tcgccggtgc aagtaccaac gtgagttctt ggcttgttag ccgagttgtt
3121 tagttagatc ttttttttgt atatattttt ttcttgttgt ttgcttgatt tctgcggtgg
3181 ccgggatgta gcgacgatga cgagggacgc ggcgacagcg ctacggatgc tccgggagag
3241 gccgggggat ttcgacctgg tgattagcga cgtgcacatg ctggacatgg acggcttcaa
3301 gcttctcgag ctcatcggcc ttgagatgga tctccccgtc atcagtaaaa ccccttcctt
3361 cacaccaact ttccattttt catgcatgtc atggcttccc tttcttggta tttgtccctt
3421 ttctcttgga agtagatgtc taaagaagta ggaagtgttg ctttcaagta gatctgttga
3481 atggttgttt gttatacatt ggataccacg tgagatcctg tatatttatt gacttcacac
3541 tcatacttgg gctgatagat ggtactaggt tggagaaaag tggtcacatg tctattatgt
3601 gcttggtctt cacattcatc aataataatc tgaacatgta acggaatttc agtggggata
3661 ttatgtcgtt gttttatgat ccgttatagt tgttgttttg ttggcgttac tacttccaag
3721 tagataagta gataaatcaa atggtttgtc gtacattgaa tagtacttga tattctgtaa
3781 aattattgac ttcattcata cttgggttgg tagatagtag gttagagaaa aatggccatt
3841 tgtctattat gtgcttggtc tttagattca tcaacaataa tccaaacata tgtatagcgg
3901 aatttcggtg gatggaatat tatgttgtcg ttttatggtc cattgtactt gttcttttgt
3961 aggcgttact atttgcaagt agatatattg aatggttcgt tgtacattgg atagcacgtg
4021 agatcatata aacttattaa cttcacccat acttgggctg atagatggta ggttagagaa
4081 aaatggccac gtgtatatta tgtgcttggg ttttagattc atcaataata atccgaacat
4141 gtaacggaat ttcggtggat ggaatattct actgttgttt tagggtctgt agtagttatt
4201 cttttgttgg tggtactact ttcaagtaga taaattgaat agtttgttgt acttagatag
4261 cacgtgagat cctataaatt tattgactta attcatactt gggatgatag atggtaggtt
4321 agacaaaaat ggtcacatgt ctattatgtg cttgatcttt agattaatct gaacatataa
4381 cagaatttca gtgaatggaa tattcccttg tcgttttatg gtttgatata gttgttcttt
4441 tgttggtgtt attgtcgaat ctgcattcgt gtaatcgtgt tacatgtatt gtcctatttt
4501 ttctatttaa tgtgcaaaat agtaaaacct atatcatttg aaaccgtcga acataaaagt
4561 gaccataact gtagcatgtc attgtctagc acgtgtgaaa tatttgctta caataaaaga
4621 tgggaaaaac atgtgtaata ccttaaatat attcaaaaga acagagtcca tatataacta
4681 gcatcatcta cgccacattt tttttcctga tccggatcca caggcaacag ttcatgatgc
4741 ccagtttatt gaaacaaatt ctgattgctg actatacgct gtgcagtgca atccgcaaat
4801 ggggagcttg aaactatgat gaagggcgtg acccatgggg catgtgacta cttggtgaaa
4861 ccagtgagcc tcaaagacat ccagaacata tggcaacatg tgtggaggaa gagaaagctt
4921 gacataagga accacaatgg cggttacaac gacggcggtg agctggttgg cgcgacgcgg
4981 accaagagga agtacacaag gaagatgaga aatgatggag ataattatgg tgagaacaaa
5041 gagaacatgg attcaactct gaagagacaa agggttgtct ggacacctga gctgcaccgg
5101 gactttgtca ttgccgtcca tgagcttgga gttgatcgta agagctcatg catcatgtct
5161 cagttatcaa acaatctttt tctttttttc aatttgtctt aagcaataaa tattttgatt
5221 atgtgaatgt aggtgctgtt ccaaggaaga tattgcggat gatgaaagtg gactacatga
5281 ccagagagaa tattgcaagt catcttcagg tttatatcta cacttatgtt taatttctat
5341 gtttctataa ttaaagatat ttggattact cttttctgat cgaaagtgtt ccatacataa
5401 acctttcata tcttctttta atgtgtgcac acaactagta atcaattttt ttgtgatttt
5461 tttattgttt tccaatgagt atggacacat ctcaaccatg tgtttgcctt tcttggtttc
5521 agaagtatcg gttatacctg aaaaggatca gcactcaaac aggcatggat cctgatcaat
5581 ttcctgaaaa atggaagtat atgaatgaac tggatgctct gaaaaattac tgtgaaaatg
5641 ggagataccg tctaacccca gccattgcct cctcaagctc gagcaatcca tttgcaagga
5701 tgaattctgc atctgcattg gcaacaaatg gctttctgcc cactcactca gttcagctca
5761 agaacagcca gagaaacatg gccatgggga cagttggcca tggtggaagc ccgggcaaca
5821 atcctgtgtt tcagccactg cagaactcat caaatgcaag aaagtgcttc ccatctggcc
5881 catctgggag ctcatttgca aacatatcaa atggcttggt gttggataca gacgattctg
5941 gtagctcata tgctggcatg ttctgtaaga gtatgtggga gacaagcaat ggctctccat
6001 cttgccattc tggcaactcg tctgcaaaca agtcaaataa tggggtttcg gcgcctgcaa
6061 atcagtttca agtacagtca aagtttgggt tttcagctct tgcaaatcag tttccagtgc
6121 agtcaaattg tgggttttcg gcgcctgcaa atcagtatca agtgcagtca aatggtgggt
6181 tttcggtgcc tgcaaaccag tttccagtgc agtcaaatgg tgagtttttg gcgccaacaa
6241 atcagtttcc agtgcagtac cctgaagtga ataatcagcc tttggttcag atgaatcaat
6301 cttctacaaa ccacttcagc acaattggca atgattacca atttccggac cttgcaaact
6361 gtagcaaata ctggcaacct acagcaccat cgatgtttcc tgatcttggt cacaatgatg
6421 ggacatcttt ccgcccgtcg caggcgaaca tcgccaatat caaccagctc tcaagctttg
6481 cagcctccag tggccaggaa ccgatgtttg gagatgaact acatggtcaa atgtcaccaa
6541 tcatgagcac catatcactg tcagatttcg atgatcagat ggggtcattc aacataggaa
6601 acgacacaag cccagcagag atgatgcatg acaacttctc acttggtagt gactcgaaca
6661 tcagttcttc aacaccaact gattcaagct tcggttctac atttcctgac tttcatctcg
6721 acagccctga gatgccggct cagatgctga atggtgggga tgaagatggc attcttctcc
6781 ctgtgctcga tgacacagtt gatcagcaag atctttttga tcaactagat gaaaacaatg
6841 gtagggaaaa acttggtagt ggccgatgtg ttaggaaggg tccctttgaa tgtttctttt
6901 agaagagcaa ttgtagggaa aaacttggaa gattggcttg aaattgtttc aaaggtggtg
6961 agtgtcaatt tgaatgataa gcaagaccaa ttcttttgca agagcaataa aaaagggttg
7021 ttttatgtta actccatgta taaagccctt atgcttaatg gtgtaataca taggaaatct
7081 ttaatttgga agctaaggat tcctttaaaa attaaaattt tcctttggta tattgaaaag
7141 ggggtgattc taacaaaaga taatcttgtt aaaagaagat ggaagggtag cttgctttgt
7201 agcttttgta actctaatga gtcaattcaa catctcttct ttgattgcat aatggctaga
7261 tacatttgga atgcgatcta tcttactttt ggagtcaagc aaccccgtaa tagttcacac
7321 ttgtttggaa attggttaag aggttttgaa cctaagctta aaagacaaac ttgggtaggc
7381 atagcggcga gttgttgggc tttgtggctc agtagaaatg acttagtctt taatggctac
7441 aaccacgtat cttttttgta ggtaattttc aaagcaactc agttgtcaag gctttggtct
7501 ttgcttctta aagaagacga aggcattgaa gtaatcgcga agtgcaagct tttagagaag
7561 cgtatgatgg agctcttctc tacttttggg tggaacttta gaagaaggat tgaagcttag
7621 cttttagttc ctcttgcttg ttatccatct ttaaaactta tttatgcttt acccatgtaa
7681 cgggagagtc ttatgtactc gtgtttgtga cttttaggct gtgtacaccc tcacaaggtg
7741 tagaggccgg gttttttata atccattatc taaaaaaaaa gatgaaaaca atggtttcat
7801 cacaggaaca aatggtccag aagggacaga caccttggat gacattgttg ctgagctgtt
7861 taatgatgta agatactctc ctttttcctg cagatcggca gctcgtttta ttcttctttt
7921 ctctctggtt tcgatttttc ttcacatacc tgtagccagt attcactaca ctgcttgatt
7981 cataccgttg gttcatgctt ataatattga aacattgggc atctttgaag tatatttcgt
8041 ttcggcttgc actttacact tggaattcgc tgagaagtgc atctgaatgg aacttatttt
8101 ctcactgcag gatttcatgg aaggttatga tgctgtcgta gatggagacc aggattttgt
8161 tccttagtcc tgactatgtg agatatgttc tgtatctgca taggctagct gctgatttaa
8221 tccatggctg ttgcacattg tgtgtgcaaa attgtgccaa ttgtaatagg ctagttagaa
8281 gcaggtcatc ttcagaaaaa gccccatttc catctagagt agtcagctca acaaaagatt
8341 ttagcttcgt cgtggttttt gagatcataa aaaaacacat tgaagttttg tcaggttgaa
8401 cgtgttctga ttgatgtgtt agatggttaa atggaataat tttcatgaat tattcgaaat
8461 ggtgcgcttt atccagtttt tatctggcaa tacttttttt ttttcgggaa tacatctggc
8521 aatactgttc ctttcttaga attatagaga taacgcttgt tttacatgca tgaccattta
8581 ctgtgcagat atagaaccaa ttatttactg ggagataaat ggaaccatgg aatatttggg
8641 tgtcacaatt tctgattctg actgggtgta agtgggtaag ccgcgaaccc acttataggt
8701 caaaataaac gagtttgtgg cttattttgg cctataagtg ggtttcgcgg gttagccgct
8761 tacaaccttt ctgagtgact tattgagttt ccactgtatg ttaccttaat ttaattttct
8821 gtctaacagc ctgcaagaaa gaaaaattcc ttttccttat tttttccatg tagccaaaaa
8881 cagttgatta ctgtgtagac agtctcatgt ttcgattgtc tgtcgcagta actgcatctt
8941 ctcattttga tatctgtgca aggtcctcgt tgtactgatc tatccatccc tgtatgatct
//