LOCUS BR000250 10000 bp DNA linear PLN 19-FEB-2008
DEFINITION TPA_exp: Oryza sativa Japonica Group ORR1 gene for response
regulator, complete cds.
ACCESSION BR000250
VERSION BR000250.1
KEYWORDS Third Party Data; TPA; TPA:experimental.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 10000)
AUTHORS Ito,Y. and Kurata,N.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Yukihiro Ito
National Institute of Genetics, Plant Genetics Laboratory; Yata
1111, Mishima, Shizuoka-ken 411-8540, Japan
REFERENCE 2
AUTHORS Ito,Y. and Kurata,N.
TITLE Identification and characterization of cytokinin-signalling gene
families in rice
JOURNAL Gene 382, 57-65 (2006)
COMMENT
PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-10000 AC107226.2 21001-31000
2814-3193 AK111864.1 2-381
4896-5048 AK111864.1 382-534
5131-5529 AK111864.1 535-933
5707-5783 AK111864.1 934-1010
6539-7884 AK111864.1 1011-2356
8303-8554 AK111864.1 2357-2608
FEATURES Location/Qualifiers
source 1..10000
/chromosome="3"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
CDS join(3070..3193,4896..5048,5131..5529,5707..5783,
6539..7861)
/codon_start=1
/gene="ORR1"
/product="response regulator"
/protein_id="FAA00254.1"
/transl_table=1
/translation="MAPVEDGGGVEFPVGMKVLVVDDDPTCLAVLKRMLLECRYDATT
CSQATRALTMLRENRRGFDVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDI
VMKGIKHGACDYLIKPVRMEELKNIWQHVIRKKFNENKEHEHSGSLDDTDRTRPTNND
NEYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNA
VNHLGIDKAVPKKILELMNVPGLTRENVASHLQKFRLYLKRIAQHHAGIANPFCPPAS
SGKVGSLGGLDFQALAASGQIPPQALAALQDELLGRPTNSLVLPGRDQSSLRLAAVKG
NKPHGEREIAFGQPIYKCQNNAYGAFPQSSPAVGGMPSFSAWPNNKLGMADSTGTLGG
MSNSQNSNIVLHELQQQPDAMLSGTLHSLDVKPSGIVMPSQSLNTFSASEGLSPNQNT
LMIPAQSSGFLAAMPPSMKHEPVLATSQPSSSLLGGIDLVNQASTSQPLISAHGGGNL
SGLVNRNPNVVPSQGISTFHTPNNPYLVSPNSMGMGSKQPPGVLKTENSDALNHSYGY
LGGSNPPMDSGLLSSQSKNTQFGLLGQDDITGSWSPLPNVDSYGNTVGLSHPGSSSSS
FQSSNVALGKLPDQGRGKNHGFVGKGTCIPSRFAVDEIESPTNNLSHSIGSSGDIMSP
DIFGFSGQM"
BASE COUNT 2621 a 2079 c 2108 g 3192 t
ORIGIN
1 tttcacaaaa ctacacgttt tgtggtccaa gttacagaca accacacaca ctttgacact
61 tggcgtttaa gttatatttt ggtagtgtag tttcacaaaa ccacactatc aatgaatgga
121 ttcacccgtg atatgacgtg gctgttccac ttaggacaag gacgtggcac cctattacaa
181 gccatcgcat gaaattaata ggatgccacg tcctcatcgt aggtagaaca accacgtcat
241 ctcacaagtg aatccattca ttgatagtgt ggttttgtga aattataatg ccaaaatata
301 tgtatttgag tgccaagtgt caaaatgtgt gtgttttatg taacttgtat cataaaacgt
361 gtagttttgt gaaatttact ctttaaagta taacataaat cttggcaata aaaagtttta
421 tatgggagtt gaaagtttgt gttcgtttta cttgaaagct ttttctcgag atgaaaagtg
481 atttggtggt ggcaatctaa acaggatgag gcgatttttc ctttactttc agtaatatag
541 gataattgct aaaagcaaca tagtaaaaca ttttgttaat tcaactatta taccattatt
601 cttttattct aaaagagacc tttcgatgat ctaccgttgg atcagcatca catggatcta
661 tgtctaccct gtacccttta tatagccctc ttcctccttc acaccctaac cctagtccaa
721 tacctcctcc ctccaccgcg ctgcgccgcc gccgccacca ccaccctcat gcttagatct
781 tgccaacaat tcagggcggt aatgatgttc ttcctcaata gagtagagat ggacgcgatg
841 tactcactag tttcctttgc aggtgctctt tctaacttga tctatagtat tcttctaata
901 gtaccaggcc tccttttgca cggagggatt ttgcgggaat ttcacgggaa ttgagttgat
961 tcctgaaatt cctgtaaaat tcttgtgttc caaaggagcc cttgatgttg atatccctgg
1021 ccctgccccc tagatctgag actccttagc ttctataact tcgatattca tcggttttcc
1081 aagaccgaag gtggaagtgc aaacgttgca ttgccaccgg tagattccac aaaaaagagc
1141 atcacgatgc gaaaatcatg atagccgcct tcgaagccct tattggagca tggattaaaa
1201 caacaatcag ttggtaagaa aatcaactat tttcactata aagttcttca atttattcat
1261 tgtgcatcct ttagattgta taaattttct attgagatag tagtagcgcg gtatatattt
1321 tcaagggaag aaatggaaat aaaaaataag catggatggc aagacatata aatttctttt
1381 tcaatactca tttgattgtc tatatttatt attgaattcg ttcaataaca taatcagcat
1441 gatgtatcat tttcccacac atatatatat atatatatat atatatatat atatatatat
1501 atatatacat acacacgcac tatatatcaa tagatgtatg ctaattacta acacacatgg
1561 caagtggccc actacatgca acattcaaga gaaaaacaga gcaatttgtt gttgtaggat
1621 tgctaatttt cctgttttat attgacatat ctagtaaaaa aagaacgtgt gaggtatatc
1681 atatatgccc tcttgaccta cttgtgataa acaactaatt aatttaagat tcacctcttt
1741 attttgaact ttgaggacgg acaaattata ctagaatgag ggaaaactta gttgtccatc
1801 tgaagacaaa gatcctaata ttggtgactc catttctttt ctaatcagcg agggataatt
1861 atatgtagca tacccttgct agttaagccg ctttcatcgt gtcaattcat accattgacg
1921 tttagaaaat gtcgaagatg ccttctgtta ttttccaatg aaaaaccttg aatttttcgt
1981 ccgttagacg cccaggtgga aaactagcat taaagtaatt aagtaaggct aatgaattaa
2041 ccaggtgatg ctaagaaaat atattttgaa tcagatcagc ttttgatttc gtatgaatat
2101 tgaaacatgc gtgcctgcat tttgattccg attttattta tggacaccat tcacgtgcat
2161 atataatcag aagcagcaat ggtgtctttc ccagtataaa agacagaaaa catttgctct
2221 atttgatgac actccggtga cgtgttctcc atacagtcaa ttctagtagt ccacatggaa
2281 gaattctcat cttaatttat ctgattatct ggtttttcaa attcaaaatt ccatactcaa
2341 aacaacacgt gttacaaata cagtggaaac ctcacggtgt cattacgcgt aagcatggct
2401 gttaaggtgg tgctagccat gtacctgcca tattggcaat gccacagaaa tcctgataca
2461 actgtgtttg tatctgtact aggggaattt ttattgcaat tcccaaaaca aaggggggaa
2521 actcaactag aaaaagggaa agaaatcaat ggaaaatcaa tgcggcccat tttttttaat
2581 aaaaaaaggg aagcgtcccg gtagccgcca gctcagcgcg cacgcagcca tctcggggca
2641 gaaaaggcgc ccccacccca cccgcagccg caagtggaaa gcagagagag agagaggcgg
2701 ccgcggcagc agtagcaggc atcattagct gctaatccct caccccctct gtcgctaatt
2761 aatccctcgg atcgccgtat ttactaggtt tactaatcac gttttggcga tttagtcttc
2821 tctcttctct ctctctcgtc tctctctccc ccacctcttc ttccctttcc cccgcctccc
2881 tctcctcttc gtcgtcaccc gccgcctccc gctgaatccg cggcttggga ggagacgccg
2941 gagtcggggg cgtggacggg ggttggatct gcttgccttg atggtggcga ttggagcgtg
3001 aattcgtgag gggggcgtgg tggtggtggt ggtggttata cggttttcgg tttcgtgggc
3061 gggggagaga tggcgccggt ggaggatggc ggcggggtgg agttccccgt ggggatgaag
3121 gtgctggtgg tggacgacga ccctacatgc ctcgccgtgc tcaagaggat gctcctcgag
3181 tgccgctacg acggtgagca gctctgcctt cgcctctgcc tctcccgcgt tctctgtcct
3241 tgtagtctat cgcttgctgt gctgcggttg tgtgggcgtg acatgattgg ttgcgtggag
3301 gcggttggtc ggataagttt cgttgtttcg gttagtgttt cgtgttccga tttgtctggg
3361 gttggggagg agtcggctgc tccgtgggtt gatttgcttt tccgtgaatt ctggggagtt
3421 tttatttttt ttctgcacat ctccgttatt gggaattttt gcccttattg tcggttttct
3481 caatctggga atagattgtt gagtttatat agattagtga ttgtattgga gatctgagcg
3541 agtttgcggt gtgaaatctg aaccgtgttg ctaatatcta atcctgcctt tttgtttgtg
3601 ctaatataag cagtagtttt taagattctt aggccagtca caatgggggt ttcactggtg
3661 tgtcatgcac atttaatagg ggtaagactg aataaaaaat gattatttgc atgaaatggg
3721 gatgagagag aaggaaagag tttcatcctg gtgaaactcg tcagcgtcgt ttccaagtcc
3781 tcggtaacag agtgaaaccc ccgttgaggc cgattcgttt cattcaccgg atctcttgcg
3841 tccgcctccg ccgtgcgacc tccgcattct cccgcgccgc gccggatttt gggtacaaat
3901 gatcccagca acttgtatca attaaatgct ttgcttagtc ttggaaacgt caaagtgaaa
3961 cccctccact gtggggattg tttcataaaa gatttcattt gagagaagat ggtataatat
4021 tttgggtagc cgtgcaatga cactagccat tgtgactggc cttatattct gtggattcat
4081 gcgggcttcg aattactatt atatcatccc aacctaagac ttgcaatata ttgggaatat
4141 atcgtcgatg ctcctagctt ttgttcccta tcccgataac attttgttat gcctaatgac
4201 tgtgaattat cacccatagt aatgactgca aattatcacg gaaagtttag cttaggatca
4261 ggagtttatt agaggcgcta tgcatcaccc acctacccca cagttaagtt ttgttgcaac
4321 aggaacgaat actccaagga tgcaatgcgg catatctagg ttgcagccta tatagaatct
4381 ttgttctgta aagtgttgct attcctttct agtttctgtt ctgggcgcca atagttcaca
4441 tatgcgcatc acagcttagg ggaaataaca aataatataa tgggtttatt actgatctat
4501 tttttcttat tatattacag ttgatttatt tcctactata agttgaatgt gtgcagcatg
4561 agaaactgtt ggattttatt ccttatccag tcttctctat tgaatgatct ctgctttaaa
4621 acgaacgtga aaagcattag gcatacccat ggaggtattc agtattcata atgtaatgca
4681 attgtacata aatatcatct gctgctttta tgccttcaaa tacactttta agtttatatc
4741 atgttgtgtg cagtactttt tcgttgcttt gttttgtttt cactctgttg tttccgaaaa
4801 ttccactcgt tcgtgggaag ctaatatcgt aatttgcatc tgcttcattt gtatgtctga
4861 atagttattt tgtttacttt gttttttttg ggcagcgaca acttgttctc aggctacaag
4921 agcattaact atgctgcgag agaacaggcg tggttttgat gttataatta gcgatgttca
4981 tatgcctgat atggacggat tcaggttact tgaacttgtt ggccttgaga tggatctccc
5041 agttattagt aagtagatta atattctcca ccctgcttgt taattctggt ttgtcaaagg
5101 cattactgaa atctgttgat aatattgcag tgatgtctgc tgattcaagg acagatatcg
5161 ttatgaaagg aataaaacat ggagcatgtg actacttaat taaacccgtc agaatggagg
5221 agttgaagaa catctggcaa catgttataa ggaaaaagtt taatgaaaac aaggagcatg
5281 agcattcagg tagcctagat gatacagatc gtaccagacc aaccaataac gataatgagt
5341 atgcttcatc tgcaaatgat ggagctgaag gtagctggaa gtctcagaaa aagaaacggg
5401 ataaagatga tgacgatggt gaattggaaa gtggtgaccc ttcttctaca tcaaagaaac
5461 caagagttgt ttggtcagtt gaactccacc aacaatttgt aaacgcagtt aatcatctgg
5521 ggatagacag taagtttttc ctacttttgg cacttatttt catcaacagc aatgtttggt
5581 cggctgtaca cttgctaatt tatttttctt ttggtgttgt ttaccacatt tgaacacctg
5641 aaccttgcaa ttacatcaaa tctttccgct ttcaagctta cacaaatttt ataattttct
5701 cttcagaagc tgttcccaag aaaattttgg agttgatgaa tgttcctggt ttaactaggg
5761 aaaatgtcgc cagccatttg caggtttgat tctggttttc atttttaatc acgggtcctt
5821 tttcttgtat catatttagc atggtgtggt ggatgttatg tttactggca ccatggaata
5881 tctacccttt tgtattatcc taattgttat tattcgtatt tattttacac atccttgctc
5941 tacctgaatg tatctactct gatttaatta gcagtagaaa ccaactaacc aaaggacttg
6001 ctcctggaat gatcttgtaa ttccagggac ttgtacatac actattttag tgctgttaca
6061 ctcttttatt gtagaatgaa accataccaa attatagatc attcaaccag tgcagatggc
6121 aacgaatcgc tctataatag atgtttgata ataaacattg tttttctgtt gttcttattg
6181 tgttgcctgg ggatcatcca tttgaaggtt ttgtctacag agtaaaattc cattggttac
6241 cttgtgcatt tgtgctgctt gtctgttgag ctccaatctc cctgttacct tcattttttt
6301 aatatatacc aggacctgtt taagtgctta gttcaatagt catgatatac agtagcttag
6361 accctgtttg aactcaggac gtccctaagt tatcttgaaa caatgtcgtt tttcttgggc
6421 atattgaagt tgctgaaaca gtaatgaagt atctgtttgc tcttgctgta acttccagtt
6481 ttttagttat gtaatgataa tcatggtgat gcaatgagtt ttttttttct attttcagaa
6541 gttcagattg tatctgaaga ggattgctca gcatcatgcc ggaatagcta atccattctg
6601 cccgcctgct tctagtggta aagtaggctc actgggagga cttgatttcc aagctttggc
6661 tgcctcaggt cagatccctc ctcaagccct ggccgccttg caggatgagc tcctagggcg
6721 acctacaaat agtttggtat tgcctggaag ggaccagtca tctttacggc ttgctgcagt
6781 caaaggaaac aagccccatg gggagagaga aatagcattt ggtcaaccta tatacaagtg
6841 ccagaataat gcatatgggg cattccctca aagcagtcca gctgttggag gaatgccttc
6901 attttcagct tggcccaata acaaacttgg tatggcagac tcaaccggca cattgggagg
6961 catgagtaat tctcagaata gcaatatagt cttgcatgaa ttgcaacagc agccagatgc
7021 catgctgtca ggaacccttc actctctaga tgtcaaacct tctgggatag ttatgccttc
7081 tcagtcatta aatactttct cagccagtga gggtctctcc cctaatcaaa ataccttgat
7141 gatacctgct cagtcatctg gttttctagc ggccatgcct ccatccatga agcatgaacc
7201 tgttcttgca acttctcaac catcgagtag tctgttaggt ggtattgatt tggttaatca
7261 agcttcaaca agtcagccct taataagtgc ccatggaggg gggaatcttt ctggccttgt
7321 aaatcgtaat ccaaatgtag taccttctca agggatcagt acttttcata ctccaaataa
7381 tccatatttg gttagtccaa attctatggg aatgggctcc aaacaaccac ctggtgttct
7441 taagacagaa aactctgacg ctctgaacca tagctatggt tatcttggtg gtagcaaccc
7501 ccctatggac tctggcttac tctcttcaca atcaaaaaat acacagtttg gtttactggg
7561 tcaggatgac atcactggta gctggtcgcc tctgccgaat gttgacagtt atggtaatac
7621 tgttgggcta agccaccctg ggtccagttc atctagtttt caaagttcta atgtggctct
7681 tgggaaattg cctgatcaag ggcgaggaaa gaatcatgga tttgttggta aaggtacttg
7741 cattccaagc cgctttgcag tggatgagat tgaatctcca actaacaact tgagtcacag
7801 cattggaagc agtggagata ttatgagccc tgatattttc ggatttagtg gacagatgtg
7861 aaggcttctt gaatttgtaa gtaggtaggt acaatatcct aattttggta gcagatagct
7921 ttggtgttct taccccaaat attgctttaa tgcattttgt cctctctata atgtgatcgt
7981 ctctacctag tgatcccatc aattttggca tatcattcat gttgcttctt tggacaatag
8041 tagaccttgg ttatgtttca agctatgaac accttgatgg cttggttgct atatttattt
8101 tacctcgcgc atttgttatg gagtatttga tttgttatgc ctatggtaat ttagcgaact
8161 agcagtatgt tcttcgtgag tcatgttcat aattgatatt tcaagttgac tgtacctttt
8221 gccttttatg caaaaacatt gtttaattgt gcaattaccg aaacctcatt tttctaatgg
8281 cattgtttat ttgtttatgc agggtaatca ctggaaacaa tttttagtgg gttgatgaac
8341 ggttgccgtg tttttcattt catccttttt tttttccttc tgtaattggt ttataaaggg
8401 aataatttat gtgacagcat gtcgaatctt ggtttataga aggttgttcg gtttaaacaa
8461 ctttggatta tttagcctca tgtgacatag ctcattttcc tttgttcatt ttttgtgtac
8521 agttttctga ttttgttgca aatcttcttc tctcactagt tcttcagctt ttctgttttc
8581 cttgcgatct tccacttaaa ttgttaccaa attagctatt catccttgca tctcccaatg
8641 agcaggttgc aattcatttg ctgtacatgt tctaatcact cttactcttt tcatggagaa
8701 gatgttctcc aagtgctcgt tacttctccc atttgagtta ccttgcgaca tattctgcgc
8761 ataatgatag ctgctgaaat acaatgtttt gcattccgta aagttcaaat gtatcttaag
8821 tactactccg tccaaaaaaa aaaaaaacaa accctagcta cgaaccatat gttacgttca
8881 agttcatagc taggattagg tttttttggg atagaagggt agaacaactc catttgcatg
8941 tacatttatc cgagctagtg ggtctggacc atttttatcc gtcagttcat catttaacag
9001 tctgttttct agtagtactc tcttccattc agtatatgac atcgactgca tcagtatcca
9061 tctaccaacc ggaagtgaaa tcagacatgc agatttgctc cagatgaagg accatgcatt
9121 gattaagcag cagatttgtc gagatatagt tcaacactag atcacgtgtt gctcggagaa
9181 aaatatgata attgttgcgg taacccgagc tttactagat caataatact ctcttactga
9241 tgacaaacca attcatgatg ctctaaccaa ggactaaatc actactccgt acggtacaat
9301 accctgaaga atcataggaa atcatgtaca cctaactagc aactacgacc catcaaacgc
9361 tcaaaccggg gggaactaaa cgaggctctc cggtgcaccg cactgcctaa tcctttccat
9421 ggcacgcctc gcgcgcccta tgggtgctca ttcgtcgtcg tcctccgggg ggctcgccgc
9481 ccgagccagc tcgttggaga cggaggccaa gccctgcatc agcctgacga cctccgccgt
9541 gtcgtcgagg tagtacttgg ccttgctcgg cttgcggccg acggtgcagg cgaagacctc
9601 cgccgtggcc gccagcgact cgccgcaggt ggagcttgtg atcatctgga acatttcctc
9661 gtcggagcgg tcgtccccga tgcacagcac gaagtcggtg cacatgcccc tctcctgcat
9721 gctcgccagc agccgccgcg ccaccaggcc cttgctcacg ccctgccaat ggcaaaggta
9781 tcaaacaccg cgaacgacca tggcgctcga tgctaacaac aacgaagatg acgaggatta
9841 ggaggaggat tcacctgtgg cttgacctca acggaatggc cggtgctctt caccgagacg
9901 ggctcgttgg cgagcacgct ctcgaggtgg tcgacgagct ccttggcttg gcatgaaccg
9961 aagtcagggt ctgcgtcctc gtagttccag acgagcaccg
//