LOCUS AP019722 4439 bp DNA circular BCT 12-JUN-2019
DEFINITION Staphylococcus epidermidis NBRC 100911 plasmid pSEP1 DNA, complete
genome.
ACCESSION AP019722
VERSION AP019722.1
DBLINK BioProject:PRJDB8042
BioSample:SAMD00169832
KEYWORDS .
SOURCE Staphylococcus epidermidis
ORGANISM Staphylococcus epidermidis
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
Staphylococcus.
REFERENCE 1 (bases 1 to 4439)
AUTHORS Miura,T., Furukawa,M., Shimamura,M., Ohyama,Y., Yamazoe,A. and
Kawasaki,H.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2019) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General Biological Resource Center
National Institute of Technology and Evaluation, Biological
Resource Center, NBRC; 2-5-8 Kazusakamatari, Kisarazu, Chiba
292-0818, Japan
URL :https://www.nite.go.jp/en/nbrc/
REFERENCE 2
AUTHORS Miura,T., Furukawa,M., Shimamura,M., Ohyama,Y., Yamazoe,A. and
Kawasaki,H.
TITLE Complete genome sequence of Staphylococcus epidermidis NBRC 100911
JOURNAL Unpublished (2019)
COMMENT Annotated at DFAST https://dfast.nig.ac.jp/
##Genome-Assembly-Data-START##
Assembly Method :: Unicycler v. 0.4.4
Genome Coverage :: 2187x
Sequencing Technology :: Illumina HiSeq; ONT GridION
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4439
/culture_collection="NBRC:100911"
/db_xref="taxon:1282"
/mol_type="genomic DNA"
/organism="Staphylococcus epidermidis"
/plasmid="pSEP1"
/strain="NBRC 100911"
/type_material="type strain of Staphylococcus epidermidis"
CDS complement(1282..2523)
/codon_start=1
/inference="COORDINATES:ab initio
prediction:MetaGeneAnnotator"
/inference="similar to AA sequence:UniProtKB:Q8CUG0"
/locus_tag="Sep02g_22340"
/product="plasmid recombination enzyme type 3"
/protein_id="BBK83383.1"
/transl_table=11
/translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLN
YDLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQ
FFEYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALT
AFQDRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIK
QKNDKLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQK
QIKAAQDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKP
LKENIEIALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELY
SEQEQQQEQQKNQKRDRGMHL"
CDS complement(2709..4088)
/codon_start=1
/gene="tet"
/inference="COORDINATES:ab initio
prediction:MetaGeneAnnotator"
/inference="similar to AA sequence:UniProtKB:P62967"
/locus_tag="Sep02g_22350"
/product="tetracycline resistance protein"
/protein_id="BBK83384.1"
/transl_table=11
/translation="MFSLYKKFKGLFYSVLFWLCILSFFSVLNEMVLNVSLPDIANHF
NTTPGITNWVNTAYMLTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNH
FFILIFGRLVQGVGSAAFPSLIMVVVARNITRKKQGKAFGFIGSIVALGEGLGPSIGG
IIAHYIHWSYLLILPMITIVTIPFLIKVMVPGKSTKNTLDIVGIVLMSISIICFMLFT
TNYNWTFLILFTIFFVIFIKHISRVSNPFINPKLGKNIPFMLGLFSGGLIFSIVAGFI
SMVPYMMKTIYHVNVATIGNSVIFPGTMSVIVFGYFGGFLVDRKGSLFVFILGSLSIS
ISFLTIAFFVEFSMWLTTFMFIFVMGGLSFTKTVISKIVSSSLSEEEVASGMSLLNFT
SFLSEGTGIAIVGGLLSLQLINRKLVLEFINYSSGVYSNILVAMAILIILCCLLTIIV
FKRSEKQFE"
CDS complement(4250..4438)
/codon_start=1
/inference="COORDINATES:ab initio
prediction:MetaGeneAnnotator"
/locus_tag="Sep02g_22360"
/product="hypothetical protein"
/protein_id="BBK83385.1"
/transl_table=11
/translation="MLLSDEEEWGKLHRNSRTKYKNLIKEISPVDLTDLMKSTLKANE
KQLQKQIDFWQHEFKFWK"
BASE COUNT 1456 a 792 c 543 g 1648 t
ORIGIN
1 aaaactattg ctctatccgc agtgcgttgg atagttttcc aatctggttg caagatatgt
61 aaatcactaa agcaatcatt ccagtaatcc accatatctc ttttaagttc gatttctaca
121 cgccataaat gttcagacat aacttcagca tctgcattat ctttacgttc ttgcttttta
181 ttataaattc taataaatct attactatct ctcacgccaa aatattttgt ttctggctta
241 ccattacgac cataaaaaat agttttctta actgctttat cagacattgc atagtagtca
301 ctcaaatcat cttcaaaatc aaaggctaaa tctaatcttg taaaaccgtc atcttccatg
361 tagcttatta tattttgttt taaccaaatc atttcatctc gtgtaagttt gtttggatta
421 aattcaatac gcatattacg tctatcccaa ctatctgctt tcactttgtc atattcaata
481 taaacttttt cttgaagtgc tttagcttta aactttgttt gaagaatatc ccaaagtctt
541 atttggggct ctacactcat aaatttagaa agggcttgag cgttgtctcg gttgagattt
601 ccaacgatcg tcattgcatc aaaacttaat tttggatcag atatgcacac agtatgtgcg
661 tccaaccggc tattagagta gccggtttta gaaaaattgt ctaaatcgtg attttccaaa
721 tgatttgaat gatttgcatg attgttttta tacataaaaa atcgactcct taatctcaat
781 ttcgtttaag gaatcgctca cccaaatata tatcttgatg tatatttaaa tatcgtttaa
841 tatctaaata tacaagatta taaaaacaac tcagtgtttt tttctttgaa tgatgtcgtt
901 cacaaacttt ggtcagggcg tgagcgactc ctttttattt tgttattaat ataacactat
961 caaaagactt ggtctaatca gatcaagtct ttttttattt aagcatttgt attatctggt
1021 aaacagttaa aactactaaa acaccaagta catacttact tgttataaaa ttctcaaagg
1081 cttctctgaa tttcatttct tcaactcctt ttattgcttt attccaattt ccttattggt
1141 cggaacctac agggctttat gtgttgttga gttggtactt tcttgggatt aatcccaatt
1201 caagtccaac caactcgcta acaagttagc taacacatag cccattccaa ccaataagtt
1261 ttctcggcat aaatgcatgt tctataagtg catacctcta tctcgttttt gattcttttg
1321 ttgttcttgt tgctgttcct gttctgaata taattctgga ttcatttttt tatctaagtt
1381 tcctgctaaa ccatttagtt ttggttcatc ttctgttaac ttattaactc tttccgcaaa
1441 ggtatttctt cctaaaactc gttctaactc ttttagtaag atttttaaaa gctttaacgc
1501 tatttctata ttctctttaa gtggctttgc attttcgtaa agttggttaa aattatcgtc
1561 tgcgttttca atacgctcaa ctgctttatt taataaatca tctttctctc gtatttcctt
1621 atctttatca tctaaggctc taccagactt tatatactcg taatcttccg aaatatcttg
1681 agcagctttt atctgtttct gaaattcatt gaaatctttt tggcttatta caacatttcc
1741 agtttcttgt atttctttgc taaataaacc acctactttt tcagtttctt gctcatacgg
1801 aacatttata ggctttttaa gcgtatttaa cgatttttgg tactcttgca ttaatttatc
1861 gttcttttgc tttatatggt ctgttttttg gctctcacgt tcatattctt gcttatgata
1921 ttctgttttt tgtttatact gacttatttg ctcatgttta gcatttgtta cttgtcttga
1981 ttgcccacgt tctaaatcat atcctcgttg tttaacatgc tcattaaatc tatcttgaaa
2041 cgctgttaaa gcttttttat tacctacaac ttctttagca cttaaacgac catcatcagt
2101 tattggaaca acgccataat gcatatgtgg tgttttttcg tccatgtgaa ctgttgcata
2161 taataaatta tctttaccgt attcttgttc taaaaactct ttagcatatt caaaaaactg
2221 ctttgtatct tctggcgttt gattatcaaa gaaatcattg tctgatgtaa ttaaaccatc
2281 aatgtgttta atcgcgtctg ttctaatttt tcttttgcct gtataattct gttcgatttt
2341 ttcatcaatc aagttattaa aattctgttt attagcattt accaaatcat aatttaagta
2401 agttttacta tggtctatat cttcattttc ataattatta ttttctcttt gaacatgttt
2461 ttgtatgccc gttgtatttg ttccagattt aacttttgaa actctaacaa tggaataaga
2521 catataaaaa tcactcctaa gcacaaaggt ttcatgtgta tttaatagtt taagtctaac
2581 agactagact tatttttaat aagtcgttaa tacgtgtgct ctgcgaggct taaacctgtt
2641 tttgctaacg caaaaaatga gtggcaaaat gctagccact catagttcta aaccaaaata
2701 taatataact attcaaactg cttttcagaa cgtttaaata caataatcgt caaaagacaa
2761 cataaaataa taaggatagc catggctaca agaatattac tatacactcc agaagaataa
2821 tttataaatt ccagaactag tttacgatta atcaattgta gtgacaataa acctcctaca
2881 attgctatac ctgttccctc tgataaaaaa cttgtgaaat ttagcaaact cattccagaa
2941 gcaacttctt cttcagaaag actacttgat actatttttg atataactgt tttagtaaaa
3001 gataatccgc ccataacaaa tataaacata aaagtagtca accacatact aaactcaaca
3061 aaaaatgcaa tagttaaaaa acttatagag atagacaatg atcctaaaat aaaaacaaat
3121 aatgatcctt ttctatccac taaaaaacca ccaaaataac caaaaacaat aacactcatg
3181 gttccaggaa aaataacact attacctatt gtcgctacat ttacatgata aatagttttc
3241 atcatataag gcaccattga tataaaacca gctactatag aaaatattag cccaccagaa
3301 aacaaaccaa gcataaacgg aatgtttttc cctagtttag gattaataaa agggttagaa
3361 actcttgaaa tatgtttaat aaaaatcaca aaaaagattg tgaagagtat taaaaaagtc
3421 caattataat ttgtcgtaaa taacataaaa catataatac ttatagacat taaaacaata
3481 cctacgatat ctaatgtatt ttttgttgat ttaccaggta ccattacttt aataagaaaa
3541 ggtatagtta ctattgtaat cataggaagt ataagtaggt aagaccaatg aatataatgt
3601 gctattattc cccctattga aggacctaac ccttcaccta aagctacaat tgatcctata
3661 aaaccaaagg ctttgccttg tttttttctt gtaatatttc tagctacaac caccataatc
3721 agtgaaggga atgcagcaga tcctactcct tgtactaacc taccaaaaat caaaataaaa
3781 aagtgattgt gaccaataaa agcaatcaat gaaccaagac agctcaaact aataccaata
3841 attaacaatt tttttatatt tatataatca gataattttc catatactgc tgttcctatc
3901 gaaaaagtta acatatatgc agtgtttacc cagtttgtaa ttccaggagt agtattaaaa
3961 tgatttgcaa tatcaggtaa agaaacattt aaaaccattt catttaatac actaaaaaat
4021 gaaagaatac aaagccaaaa taaaacgcta taaaacaaac ctttaaattt tttatataaa
4081 ctaaacaatt ttacctcttt acttgaggtg actaaagttt ataggggtaa attattcttt
4141 cacctcatat aaattcccca aatttttaaa tagacacttc ataaaaaaat cctcctaaat
4201 tagaatagtt taaatatatc atttttgttc agtaatatta atatgtacac tatttccaaa
4261 atttaaattc atgttgccaa aaatcgattt gtttttgcaa ttgtttttcg ttcgctttta
4321 aagtcgattt cattaagtcc gttaaatcga ctggcgaaat ttcttttatc aaattcttat
4381 attttgttct agaatttctg tgaagctttc cccattcttc ttcatcactc aataacata
//