LOCUS AP012165 4255 bp DNA circular BCT 07-OCT-2016
DEFINITION Komagataeibacter medellinensis NBRC 3288 plasmid pGXY060 DNA,
complete sequence.
ACCESSION AP012165
VERSION AP012165.1
DBLINK BioProject:PRJDA64985
BioSample:SAMD00060987
KEYWORDS .
SOURCE Komagataeibacter medellinensis NBRC 3288
ORGANISM Komagataeibacter medellinensis NBRC 3288
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
Acetobacteraceae; Komagataeibacter.
REFERENCE 1 (bases 1 to 4255)
AUTHORS
CONSRTM Gluconacetobacter xylinus genome sequencing consortium
TITLE Direct Submission
JOURNAL Submitted (13-APR-2011) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, NITE Bioresource
Information Center (NBIC), Department of Biotechnology; 2-49-10
Nishihara, Shibuya-ku, Tokyo 151-0066, Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Ogino,H., Azuma,Y., Hosoyama,A., Nakazawa,H., Matsutani,M.,
Hasegawa,A., Otsuyama,K., Matsushita,K., Fujita,N. and Shirai,M.
TITLE Complete Genome Sequence of NBRC 3288, a Unique
Cellulose-Nonproducing Strain of Gluconacetobacter xylinus
Isolated from Vinegar
JOURNAL J. Bacteriol. 193, 6997-6998 (2011)
COMMENT ##Genome-Assembly-Data-START##
Genome Coverage :: 8x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
This work was done by Gluconacetobacter xylinus genome sequencing
consortium
including Department of Microbiology and Immunology, Yamaguchi
University School of Medicine,
National Institute of Technology and Evaluation,
Genetic Resources Technology, Faculty of Agriculture, Kyushu
University,
Department of Biological Chemistry, Faculty of Agriculture,
Yamaguchi University and
Mizkan Group Corporation Central Research Institute.
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
FEATURES Location/Qualifiers
source 1..4255
/db_xref="NBRC:3288"
/db_xref="taxon:634177"
/mol_type="genomic DNA"
/organism="Komagataeibacter medellinensis NBRC 3288"
/plasmid="pGXY060"
/strain="NBRC 3288"
CDS 1..1044
/codon_start=1
/locus_tag="GLX_31880"
/product="conjugal transfer protein"
/protein_id="BAK85349.1"
/transl_table=11
/translation="MAIYHLSVKSISRSAGRSVVAAAAYRAGQELTDERQGLTHDYTR
KQGVEDAFIVAPDGADWAQDRNALWNAAEAAEKRKDAKTGREYELALPAELDAGARKE
LARDFARELVARYGVVADVAMHEPGREGDNRNHHAHILTTTRTVGENGLGAKTRVLDV
ASTASTEIEHMRGVWARQVNMALERHQVEQRVDHRSFERQGREQEPTRHMGVSATAME
RQAAREIPGREPVTDLGKQNAEIRERNRVLETARKAVEKAQELFSGLEKRARQAVGLA
RKIGQRMEREREAERQRKELARQAEIRRQQDIRAAEEARKAAEKDRQKQLAKEIDEPT
FRRSRDRGPSIGF"
CDS complement(1281..1643)
/codon_start=1
/locus_tag="GLX_31890"
/product="hypothetical protein"
/protein_id="BAK85350.1"
/transl_table=11
/translation="MLFFLHGQNFLPLLNGCCMLKRFEDSLAQRIDAVAWKGFSFIEW
WELKSWYEKDRIGKGVWRDIYDRFKSIADDDEAELYLYQSDSGVMLIHSDGLNRIPST
GIWESISGSKTQEDDDNE"
CDS complement(1691..1966)
/codon_start=1
/locus_tag="GLX_31900"
/product="plasmid stabilization system"
/protein_id="BAK85351.1"
/transl_table=11
/translation="MRVEWSDEALTDRAAIVDYLLPRNPHAAKRILLRLIDATTDLAM
FPNIGREGEDGTREWVIVHPYVLLYEVDNAAKSVRVLRVWHMSQDRL"
CDS complement(2320..2919)
/codon_start=1
/locus_tag="GLX_31910"
/product="hypothetical protein"
/protein_id="BAK85352.1"
/transl_table=11
/translation="MAQIVRLTTKQQRSGQEEAAQAAEQLSLLSEELLKHLPGEARIA
ISRATHALQKAARPDTTEGLWPGGFTMLSRMQTATIWDAIRALPSDDRPNQVRHAFDL
VLLNLRQDTGEVLLTRDQLAEEIDCAPRSVSTIMGTLEKMGVIRRERRKIEGVRGPGM
AVYFINPHVAWNGSLDVRKAQAAETRPPMQLELLHGGVR"
CDS complement(3782..4039)
/codon_start=1
/locus_tag="GLX_31920"
/product="hypothetical protein"
/protein_id="BAK85353.1"
/transl_table=11
/translation="MTPIEKAKQQVEQAKARYQALLARQNAEERKLDTRRKVILGGLL
IGAAGKDERFGRVIDELMKRITRDHDHKAFEGWQKPEPDRS"
BASE COUNT 842 a 1190 c 1269 g 954 t
ORIGIN
1 gtggcgatct accatctgtc tgtcaaatcc atctcgcgct cggccggtcg cagcgtcgtg
61 gctgctgctg cctatcgtgc cggtcaggaa ctgacggacg agcggcaggg cctgacgcac
121 gactacaccc gcaagcaggg ggtggaggat gcgttcatcg tggccccgga tggcgcggac
181 tgggcgcagg accggaacgc cctgtggaac gcagccgaag cggccgagaa gaggaaggac
241 gccaagaccg gccgggaata cgagctggcg ttaccggccg agctggacgc gggcgcacgg
301 aaagaactgg cccgggattt cgcccgtgag ctggtggcgc ggtacggggt ggtggccgat
361 gtggcgatgc atgaacccgg ccgggaaggg gataaccgga accatcacgc ccatatcctc
421 accacgaccc ggacggtcgg ggagaatggt ctgggggcca agacgcgggt tctggacgtg
481 gccagcaccg cctcgaccga gatcgagcac atgcgggggg tgtgggcgcg ccaggtgaac
541 atggcgctgg aacggcacca ggtcgaacag cgggtggatc accggagctt cgagcgccaa
601 gggagggagc aggagccgac ccggcacatg ggggtttcag caaccgccat ggagcgtcag
661 gcggcccgcg agatccccgg tcgggagccg gtgacggatc tcgggaagca gaacgcggag
721 atccgcgagc ggaaccgggt tctggaaacg gcccgcaagg ccgtggaaaa agcgcaggag
781 ctgttctccg gccttgagaa acgggcacgg caggcggtcg gtctggcccg gaagatcggg
841 cagcggatgg agcgggagag ggaggccgag cgccagagga aggagttggc acgtcaggcc
901 gaaatcagac gtcagcagga catccgggcg gccgaggaag cccggaaagc cgccgagaag
961 gaccgccaga agcagctcgc caaggagatc gatgagccaa cgttcaggcg gtcacgggat
1021 cgaggaccaa gtattgggtt ttagagatta ccgtgcagat gttgtgctta tctgtcggcc
1081 tttttcattg tatgtataaa tcaaagagcc ttttcttacg ttaacagtcg atgatgtata
1141 gccagttagt ccatcatctc ttccgcttcc ggcgctgact gttgctattt gtcggccgcg
1201 ttcatcgtaa atatatacca aagaaccttt ttgaatggca tttccgatag gcattattta
1261 attatccact tcttttacta ttattcgtta tcatcatctt cttgggtttt tgacccagat
1321 atgctttccc aaataccagt agaagggatt cggttcaaac cgtctgaatg aatgagcata
1381 acaccactat ctgactgata aagatataat tcagcctcat catcatcagc tattgatttg
1441 aatctatcgt aaatatccct ccatactcct ttgccaatac gatctttttc ataccaagat
1501 ttcaattccc accattctat aaatgaaaaa cctttccaag ccacggcatc aattctttga
1561 gctagggaat cttcgaaccg tttaagcata cagcacccat ttagtaacgg caaaaaattt
1621 tgtccgtgca aaaaaaataa cactcacaaa attttttgca atcactaaat tggggattcg
1681 ttgtttttgc ttacagccga tcttgcgaca tgtgccagac gcgcagaacg cgtacgctct
1741 tggcggcgtt atcgacttcg tagagcagca cataagggtg aacgatcacc cattcacggg
1801 tgccgtcctc accttctcgg ccgatgtttg ggaacatggc aagatctgtg gtggcgtcga
1861 tcagccggag caaaatccgc ttggctgcgt gcgggttgcg gggaagcaga taatcaacga
1921 tggcggcccg gtctgttagg gcttcatcgg accattcaac ccgcacgccg ttcctcgtgc
1981 ggcagggcgt cgattgccgc ctgaacacgg gctagatcag ctttcaggat cgtcaaaacc
2041 tgttcggccg gaactgccgg ttttgtgctg ttccgggcct tgcggattgc agctcttttg
2101 gcggccagtt cgtcggaaag atcggtcatt tgtatctctt ttccgcaagt tgtttaggac
2161 tgatgccgag ttggcgaggg ctgattccta gctgtcttgg acttaggcca agtgctcgtg
2221 ggtttaaccc tagagccttg ggattgaggc caagggcttt tggatttgta cctaaagacc
2281 ttgggttcgt gccgagtaat ctactgtttc gacgtaggct caccgcactc caccatggag
2341 gagttcgagc tgcatggggg ggcgggtttc cgctgcctgt gccttgcgga cgtccagcga
2401 accattccat gccacatgcg ggttaataaa atacacggcc atgcctgggc ctctcacccc
2461 ttcaattttc cgtcgttcgc ggcggattac gcccattttt tccagcgttc ccatgatggt
2521 gctgacgcta cgaggcgcac agtcaatctc ttcggcgagc tggtcgcggg tgagcagcac
2581 ctcaccggtg tcctgccgga gattgagcag aaccagatca aaggcgtgac gcacctgatt
2641 gggtcgatca tcggatggca gggcgcggat agcgtcccag attgtggcgg tctgcatacg
2701 gctcaacatg gtgaaacctc ccggccaaag cccttcggta gtatctggtc gcgcggcctt
2761 ctgaagcgcg tgtgtggccc gtgagatggc tatacgcgcc tctccgggca aatgcttcag
2821 gagttcttcg gacaggagtg agagctgctc ggccgcctgt gcggcttcct cctgcccgga
2881 tcgctgctgt ttggtggtga ggcgcacaat ctgggccatg gctcgctccc tgtggagaac
2941 ccgtcattag gtcacggaat ccgtgatcca aaggtcacag agtccgtgac ctaatgcaac
3001 ctgtttctgc cggatttctg cggggtgtgg cgatccctaa gaaagagaaa agaatctaat
3061 ctctctgttg gtctctcttt tttcggtgga aaactgccat ttcggggtct gttccggcgc
3121 cctacgggcg ggctacgccg ctcccgctcc gcgctcgccc ggaccctgta gcgtcagtag
3181 aatcgagcaa aagaaaatgg ctcaggaagc ggtgaggggg ctggcaggct ttccccttcc
3241 ggtgatggtc aagggagata ccagccagtc acgttcccct tggcgtccgc atacggaaag
3301 cagacggtcc cgcctttctg gcgttccgtg gtccatccgt tcccacggca catggtcagc
3361 aggtcaagac taccctgccg atcgaggcca taagcccgtt gtccggccgg ggtatttgcc
3421 cagctcgcgg ccgcctcctg attccgggct ttctggtatc cgtccgcgtg ccccgtgtcc
3481 catccagctc gctgaccgac gaaatatccc ccaccaaacg ccaccagaac gatcaggagg
3541 gccgtcaggc ccgtccagag tagagatgag cgtatttcgg tctgactggc ctgtagcgcc
3601 tcctgtgagg ctcctgtggc ctgtctgagc gtggtctgca tttcggccga cagggcgtgt
3661 tcctgctggt tccggatggc ctgatcggat cgaacggccc gaagaaggcg gttcgtctcc
3721 gccatttccc ggccgagctg gtcgaacgcg gccagcccgt catccagctc gcgttcgtcg
3781 atcatgaccg gtcaggttcc ggcttctgcc acccctcgaa cgccttgtgg tcatggtcgc
3841 gggtgatgcg tttcatcagt tcgtcaatga cgcggccgaa gcgttcatcc tttccggccg
3901 cgccgatcag cagccccccg agaatgacct tgcgccgggt gtccagcttg cgttcctcgg
3961 cgttctgtct ggcgagcaaa gcctgatacc gggccttcgc ctgttcgacc tgctgtttcg
4021 ccttctcgat gggtgtcatt tttcctcccg caccaagtgg gtgcaatggt ctgttgtgat
4081 ttccgtttcc gcgtgaccct gttgaggata cccgattttt cggaagtttc cttgattcct
4141 cgtggtgtgc aaacaaccct tgcgacaaag gagtgaaggg cgcactttag cattgcttcg
4201 caatgcgtgc gtcagggacg ttccttccct gaacccttcc tgaacggagc gagtc
//