LOCUS AP012163 4776 bp DNA circular BCT 07-OCT-2016
DEFINITION Komagataeibacter medellinensis NBRC 3288 plasmid pGXY040 DNA,
complete sequence.
ACCESSION AP012163
VERSION AP012163.1
DBLINK BioProject:PRJDA64985
BioSample:SAMD00060987
KEYWORDS .
SOURCE Komagataeibacter medellinensis NBRC 3288
ORGANISM Komagataeibacter medellinensis NBRC 3288
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
Acetobacteraceae; Komagataeibacter.
REFERENCE 1 (bases 1 to 4776)
AUTHORS
CONSRTM Gluconacetobacter xylinus genome sequencing consortium
TITLE Direct Submission
JOURNAL Submitted (13-APR-2011) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, NITE Bioresource
Information Center (NBIC), Department of Biotechnology; 2-49-10
Nishihara, Shibuya-ku, Tokyo 151-0066, Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Ogino,H., Azuma,Y., Hosoyama,A., Nakazawa,H., Matsutani,M.,
Hasegawa,A., Otsuyama,K., Matsushita,K., Fujita,N. and Shirai,M.
TITLE Complete Genome Sequence of NBRC 3288, a Unique
Cellulose-Nonproducing Strain of Gluconacetobacter xylinus
Isolated from Vinegar
JOURNAL J. Bacteriol. 193, 6997-6998 (2011)
COMMENT ##Genome-Assembly-Data-START##
Genome Coverage :: 8x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
This work was done by Gluconacetobacter xylinus genome sequencing
consortium
including Department of Microbiology and Immunology, Yamaguchi
University School of Medicine,
National Institute of Technology and Evaluation,
Genetic Resources Technology, Faculty of Agriculture, Kyushu
University,
Department of Biological Chemistry, Faculty of Agriculture,
Yamaguchi University and
Mizkan Group Corporation Central Research Institute.
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
FEATURES Location/Qualifiers
source 1..4776
/db_xref="NBRC:3288"
/db_xref="taxon:634177"
/mol_type="genomic DNA"
/organism="Komagataeibacter medellinensis NBRC 3288"
/plasmid="pGXY040"
/strain="NBRC 3288"
CDS 1..882
/codon_start=1
/locus_tag="GLX_31800"
/product="DNA helicase"
/protein_id="BAK85341.1"
/transl_table=11
/translation="MAAVTSTINDSALPRLDIRSAFVTAPEPLDFVLPGMLAGTVGAL
IAPGGTGKSWFALELAMAVAGGPDLLEMSVDDKYGGVLYLAAEDPALAITHRLHSVGY
VVRDSIGMLAENLEIIPLMGRPVNLLLPAWAEALKRMGTGKRLIILDTLRRFHVADEN
NGGDMAALLSVLEDIAQVTGASIMFLHHAAKGASLNGSGDVQQASRGSSVLVDNVRGG
QINLVGMTDAEAQTYGVTDRRQFVRSVQSKVNFGCGNSDRWYRRDTGGVLVPAHLERQ
EPTPTTRRPTGRARGNA"
CDS 875..1720
/codon_start=1
/gene="repC"
/locus_tag="GLX_31810"
/product="replication protein C"
/protein_id="BAK85342.1"
/transl_table=11
/translation="MRNNKALTHARHDPGHVLAHGLFRSLASGDYKRLKLDVAYEIGN
ERLEFGAKEPLGTDEMRVLQGLVALAGPKGLILKADTQSSDARQLFLDLFAPASEFVA
ATDQPESLVVRGSFRRLAREIGMNESGPNITRIRQAIERLFAVTIFIQSGRRRVGCRL
ISSYASDEGVGDLYVALNPRLTEAILGQGQHVRIDMEEVRGLKSDPARLMHQRLSGWI
NPGMRREVSIDTLCSYVWPDAGSDAAMRKRRQRIRSALAELRKVGWFADVQEGVVTVG
RPKIA"
CDS 2996..4684
/codon_start=1
/locus_tag="GLX_31820"
/product="relaxase/mobilization nuclease
topoisomerase/primase fusion protein"
/protein_id="BAK85343.1"
/transl_table=11
/translation="MSIRTGDAPPRVALQQIVDAALSSPSSVFDFMDRLEAAGVGVRA
NVASTGKMNGFSFEYRGVPFKASDLGKAYAWKALQERGIEYVQDRDGAALIARANRSL
APGGNVNDRSPDALDRDARPAGDRSIPADRGIPGGGGVTDRDVDQGGRGIGSDDPGSA
RRSAERLNVSDGRSLESRQRGGEDSRPLEVGGDGGTRPASRDEAPGRTTDGVVPAPDD
MRDHRRRIGGWNALGRRVGDLASDAPALTTKPVTAAVRAKMEAWSVQAGALSSPLYRL
TLKSRRDALPSFNIGKGRGADGAEQFYSASDVAALIPYLSAQNMKGRDIYLTPIDAAH
HYLVVDDMTPDTLTAMTGQGWSPAIVQESSAGNRQAVLKVPRIDGPNEQRVANALVVS
LNREFGDPNFSGAIHPFRMAGFANKKPGRDNAFTRIITAAGVICEKAASALAELRAAF
RPTPLPVSASAPSPGRIIRPAVSGGEFSRARGMILGLAIKHGWTVDESRLDFQAARLM
SAEGMSVDEVAAGIVAESPNLTARHRDPHGYAVRTAENAAAQGAKRPSPDDMEP"
BASE COUNT 945 a 1319 c 1488 g 1024 t
ORIGIN
1 atggctgccg tgacatccac gataaacgat tctgctctgc ctcgtctcga tattcgatca
61 gcgtttgtga cagcgccgga gcctttggat tttgtcctgc ccggcatgtt ggccggaacg
121 gtcggtgcgt tgatcgcgcc cggaggcaca ggcaaatcgt ggtttgccct ggaactggct
181 atggccgttg cgggtggccc tgatctgctt gaaatgagcg ttgatgataa atatggcggc
241 gtcctttact tggccgcaga agacccggcc cttgccatta ctcatcgtct gcactctgtc
301 ggatacgttg tccgcgatag catcggcatg ttggcagaga accttgagat catccctttg
361 atgggtcggc ccgtgaacct gttgcttccg gcctgggcgg aagcattgaa gcgaatggga
421 acgggaaagc gtcttatcat cttggatact ctccggcgct tccatgtcgc tgatgaaaac
481 aacgggggtg atatggctgc tctgttgtca gtcctggaag acattgccca agtgaccggc
541 gcatcaatca tgtttttgca ccatgccgcg aaaggtgcgt cgttgaacgg atcgggtgat
601 gtccagcaag cctcacgcgg atctagcgtt ttggtcgata acgtgcgcgg tggtcagatt
661 aacctcgtcg ggatgaccga tgcggaggct caaacatacg gtgtcaccga tcgacgccag
721 tttgtccgat cagtccagag caaggtgaat tttggttgcg ggaacagtga ccgatggtat
781 cgccgcgata cgggcggtgt gcttgtcccg gcccatcttg aacgtcagga gccgaccccg
841 acgacccggc ggccgacagg aagggcgcgg ggcaatgcgt aataataaag cgctcacaca
901 tgcgaggcat gatcccggtc atgtcttggc gcatggccta tttaggtcgc ttgcatctgg
961 tgattacaag cgtttgaaac tggatgttgc ttatgagatt ggcaatgagc gtcttgagtt
1021 tggcgcgaaa gaaccgcttg gcactgatga gatgcgcgtt ttgcaaggtc tcgttgcttt
1081 agctgggccg aaggggctga tcttaaaagc cgatactcaa tcatctgatg ctcgacagtt
1141 atttcttgat ctctttgctc ctgcatctga gtttgtcgcc gcaacagatc agccggaaag
1201 tcttgtcgtc agagggtcat ttagacggtt ggcgcgagaa atcggcatga atgaatccgg
1261 gccaaacatc acgaggatac gtcaagcgat tgagcggctt tttgccgtga cgatctttat
1321 acagtcgggc cggaggcgtg tcgggtgtcg tttgatctcg tcttatgcgt ctgatgaagg
1381 ggtcggcgat ctgtacgtcg ctttgaaccc gcgcttgacc gaggcgatcc ttggtcaagg
1441 tcaacatgtc agaattgata tggaagaggt gcgcggtctc aagagtgatc ctgcacgtct
1501 catgcaccag cgtctctctg gctggatcaa tccaggcatg aggcgagagg tctccattga
1561 tactctttgc tcttatgtgt ggcccgatgc cgggtctgac gcggccatgc ggaaacggcg
1621 gcaacggatc aggtcagcat tggccgaatt gcgtaaagtt ggctggtttg cagacgtgca
1681 agaaggcgtt gtgaccgtcg gcagacctaa aattgcgtag tatcggtcac aaaaccgcgt
1741 agaatcggtc acagaagcgc gtagaatcgg tcacaaactg acccccttaa aatgccgttt
1801 tgtcgttata ttacaacggc ttatgagaaa ccctcaaaaa tccatccaga cttatccaga
1861 cgtctctaag acgtctggat aaggctgcgc cacacaccgc cgcgcgcgcg cgcgcggggg
1921 aaaaagactt gcgaccgcag ggagcaccgc ttccgccgca ggcggtgcct cgtctccata
1981 attagcttga cggccagatg aatgtgtgat tcggctatgg ttaatagcga ggtgtaaccc
2041 ggcaagccgg attaacctcg ctccgccgcg ttgcggtcgt tcggctcccg ccttcccttc
2101 ggtcagttgg ggcctctctc ggagtgcgcg tttatggagc aatcatcacc ttccccgaag
2161 aagcgccgtt atggcccgac cccgaaagcg tcttcggatc gtcggtggca ctctgtctct
2221 tgtcgcctga ccgatgacga gcttgccctt gtcgatgctc gccggggcaa ggttcgtcgc
2281 ggcgaatggt tacgcctctc cgccctgggc aaacctcccc gcattgtccc ggaattgaac
2341 cgggtcgctt gggtcgatct tgcccggagc gcatcgaacc tcaaccagat cgcccatgcg
2401 gtgaattgcg gcgaggttcc ggccggtggt gatcttgcat ccgtcctcga tgcactccgg
2461 gccgacctcg acgccttgcg tttggcgatg atcggaggcg gcgatgaagg cgaaggttga
2521 gcgcggctcc ggtttccggg gcgtccttga ttatgcgttt ggcaaaggcg acgcggagat
2581 catctgcggc acgatgactg gtaagacgcc tcgcgctctt gccacagagt ttggcttgtc
2641 cagggcggca cgtcccgatg ttgcccggcc ggtctggcac acgtctctgt ctctgcctcc
2701 tggtgagaca aggacaccgg gcgagtggtc gcagattatc gctgacttca tggatggtat
2761 gggcctgggc ggacatcagt atgtcgcggt caggcaccat gacactgacc atgaacacgt
2821 acacatcatc gcgtcgcgca tcggcctaga cggctctctc tatctcggga agtgggatgc
2881 caagcgggca atcaagctga ccgcagacct tgaggttaag cacggcctca ctgtcacgaa
2941 gggtctcgaa gacggcccgg ctcctgtcgc aacgccaacg aggaaggaag tcgaaatgtc
3001 catcaggacg ggcgatgcac cgccgcgcgt cgcattgcaa cagatcgtag acgcggccct
3061 gtcgtcaccg tcgtctgtct ttgactttat ggatcgtctc gaagcggcag gggtcggtgt
3121 ccgggcgaat gtcgcatcaa ccggcaaaat gaacggcttt agctttgaat accggggtgt
3181 gccgtttaag gcgtctgacc tgggcaaggc atacgcatgg aaggcattgc aagagcgagg
3241 gatcgagtat gtccaagatc gagacggtgc ggcgcttatc gcaagagcaa accgaagcct
3301 cgcgccgggc ggtaacgtca acgacagaag cccagatgct cttgatcgag acgctcgacc
3361 ggctggcgac cgatcaatcc cggctgaccg tggaataccg ggcggcggcg gtgtcactga
3421 tcgagacgtt gaccaaggcg gccgaggcat cggaagcgat gatcctggga gcgcacggcg
3481 aagcgcagag cgtcttaatg tcagcgacgg ccgcagtctc gaaagccgac agcgcggcgg
3541 cgaagacagc cgacctcttg aagtcggcgg agacggcggc acgagaccag catcgcgaga
3601 tgaagcgcct ggtcgaacga cagacggcgt tgtcccggcg cctgatgaca tgcgcgatca
3661 tcgtcgccgt atcggcggct ggaacgctct tgggcgcagg gttggtgatc ttgcgagtga
3721 tgcacccgct ctgacgacaa agccggtcac agcggctgtc agagcgaaga tggaggcatg
3781 gtctgtccag gccggggcgc tgtcatcgcc tctctatcgt ctgacgctca agagccgccg
3841 cgatgctctg ccatcattta acattggaaa gggccggggc gcagacggtg cagagcagtt
3901 ttattctgca tctgatgttg ctgccctgat cccttacttg tcagcgcaga acatgaaggg
3961 ccgggacatc tatctgaccc cgattgatgc ggcccatcat tatctcgtcg tggacgacat
4021 gacgccggat accctgaccg ccatgacggg acagggctgg tctccggcca ttgtccagga
4081 gagcagcgcc ggaaaccggc aagctgtttt gaaggtgccg cgcatcgacg gcccgaacga
4141 acagcgtgtc gcaaacgccc tagtcgtgag cctgaatcgg gagtttggcg atcccaattt
4201 tagcggtgcg atccatccgt ttcggatggc tggttttgca aataagaagc ccggccgaga
4261 caacgctttt acccggatca tcacggcggc cggtgtgatc tgtgagaaag cggcatcggc
4321 tcttgctgaa ttgcgggcgg cgttccggcc gacacctctg cccgtatcgg catcggcccc
4381 gtctcccggc cgcatcatcc gtccggccgt ctctggtggc gagtttagcc gtgcgcgtgg
4441 aatgatcctt ggactcgcta tcaagcacgg ttggactgtt gacgagtccc gcctggattt
4501 ccaagccgct cgcctcatgt cggccgaagg catgtccgtt gatgaggtcg cggccggtat
4561 cgtcgcggag agtccgaacc tgaccgcgcg tcacagagac ccccatgggt atgctgtgcg
4621 gacggctgaa aatgcggctg cccagggagc gaagcgaccg tctcccgatg acatggagcc
4681 gtgatctttt cccggcgcgc gcggcgcggc ggggtgtgta attgccgggg taggtgctgg
4741 tgacaccacc ccggccaaca gccaaaggag ataaca
//