LOCUS AP010807 5398 bp DNA circular BCT 07-OCT-2016
DEFINITION Sphingobium japonicum UT26S plasmid pUT2 DNA, complete genome.
ACCESSION AP010807
VERSION AP010807.1
DBLINK BioProject:PRJDA19949
BioSample:SAMD00060927
KEYWORDS .
SOURCE Sphingobium japonicum UT26S
ORGANISM Sphingobium indicum UT26S
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingobium.
REFERENCE 1 (bases 1 to 5398)
AUTHORS Nagata,Y., Ohtsubo,Y., Oguchi,A., Ankai,A., Yashiro,I., Fukui,S.,
Kamata,S., Takahashi,M., Ichikawa,N., Tanikawa,S., Tsuda,M. and
Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General Department of Biotechnology
National Institure of Technology and Evaluation, NITE Genome
Analysis Center (NGAC), Department of Biotechnology; 2-49-10
Nishihara, Shibuya-ku, Tokyo 151-0066, Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Nagata,Y., Ohtsubo,Y., Endo,R., Ichikawa,N., Ankai,A., Oguchi,A.,
Fukui,S., Fujita,N. and Tsuda,M.
TITLE Complete Genome Sequence of the Representative
gamma-Hexachlorocyclohexane-Degrading Bacterium Sphingobium
japonicum UT26
JOURNAL J. Bacteriol. 192, 5852-5853 (2010)
COMMENT "Nagata, Y., Ohtsubo, Y. and Tsuda, M. are at Department of
Environmental Life Sciences Graduate School of Life Science,
Tohoku University. The other authors are at NITE Genome Analysis
Center (NGAC).
Please visit our web site. URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE. The database
contains genome sequence data, physical maps and the genomic and
proteomic data of the microorganisms analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
The microbial strain and microbial genomic DNA clones used for the
sequencing project are available through the NBRC.
URL:http://www.nbrc.nite.go.jp/e/index.html
FEATURES Location/Qualifiers
source 1..5398
/culture_collection="NBRC:101211"
/db_xref="NBRC:101211"
/db_xref="taxon:452662"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 101211"
/organism="Sphingobium japonicum UT26S"
/plasmid="pUT2"
/strain="UT26S"
CDS 1..654
/codon_start=1
/gene="rep"
/locus_tag="SJA_P3-00010"
/note="replicase"
/product="plasmid replication initiation protein Rep"
/protein_id="BAI99221.1"
/transl_table=11
/translation="MTDTRTLPATKPQPSRWVQTDRASHEAWARLSASNPKAGALLHL
LAARVGDNNAVVVSHKTLAELLGVRSITTIKTAITALVSGNWIEVRRIGENGTVNAYV
LNDRVVWSGPREGLRYSLFSATVVVSDSEQPDRDTLGKQEPLRRLPPIGERQLPHGDG
LPPPSQPFLDGIEPDLPATEQQNLDPAMQEELSQLVIGLGNRLRAPDASPPDDATDI"
CDS 690..1082
/codon_start=1
/locus_tag="SJA_P3-00020"
/product="hypothetical protein"
/protein_id="BAI99222.1"
/transl_table=11
/translation="MGITLREASEKVGVTRQTLMKAIKTGRVSAEKSDNGEWRIEPVE
LFRVWPPVNGVQQPLQPNITGSDTPGLQAENRLLREQVAELREERNAWREQAQRLALT
DQRAVSQPSSRPGFWSRLFGRQGDSPSG"
CDS 1224..2024
/codon_start=1
/locus_tag="SJA_P3-00030"
/note="opacity protein or related surface antigen"
/product="putative outer surface protein"
/protein_id="BAI99223.1"
/transl_table=11
/translation="MFRVYLGGLLMKKIITCAVLASAALATPAFAQDEADKGMYFQLR
TGVADLNNPDFAIIDTWSEPNNRLDTKLNTKSAATFGGELGYDFGGVRVGLELAYQRN
KVKGITLKSLNGTAITAEDLSDVVEGLGELDIISVDDLDGVDINGTTISATNGSVAKL
RQLAVMANVTYDIPLGGNTFKPYVGVGLGAVGSHLKALGEDDGSVRFAWQLRAGAAVK
VTKGIDLTADYTYRQTGSGKLNFGDEDVEYRLGKTKASLFQVGLRFTL"
CDS complement(2147..3370)
/codon_start=1
/gene="traA"
/locus_tag="SJA_P3-00040"
/note="MobA/MobL family protein / ATP-dependent exoDNAse
(exonuclease V), alpha subunit - helicase superfamily I
member"
/product="conjugative transfer protein TraA"
/protein_id="BAI99224.1"
/transl_table=11
/translation="MASFHLAVKAIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTR
KQGVEHSELMLPTDAPEWAADRERLWNAAELAETRKNATVAREYEIALPVELSADERR
ELALGLAREISERHGVAVDVSIHAPGREGDQRNHHAHLLTTTRRLGPEGLGEKTRELD
QKQSGEVERWRERWAEMQNRALELANVPDRVDHRSHQRQGIEQEPTVHMGPSATAMER
RAEQVAAREGRAYEPVTAVGQHNAGVVERAGLRQYIERGTEWLRDMGQRIAGRLHDVA
ASLSGAVERDRREAAEVQLAREAQERLAADRARQEAQERQQVRERERVAEKFNTIAGK
REAGAHGYGDHNSDWKATPEALRKAVDAYNGANQHTKDLYIEQIQREPKMARAVGQLI
GERELILQRDRGMSL"
CDS 3538..3813
/codon_start=1
/locus_tag="SJA_P3-00050"
/product="putative mobilization protein"
/protein_id="BAI99225.1"
/transl_table=11
/translation="MAAPTPEAIENARRKVEQAKARLQALEARAATLNRKQDARRKII
LGGLLLDAAMKDPAWESRLNDLMGRISRDQDRKAFDGWTFKGGPADA"
CDS 3806..4246
/codon_start=1
/locus_tag="SJA_P3-00060"
/product="hypothetical protein"
/protein_id="BAI99226.1"
/transl_table=11
/translation="MPDPLDPAEFDAPPPADPGADYRVLLDAMRQAGADGIAQQSAAL
VQRIEQDARQRLEWGQRMGTAVDDLQRVAGQLQRVSAGIWWDRLKEWLSAALIGLGLI
FAAALAYQWAKEPKIEQRLYGCTARWDAKTGKCKGDWVPLQARE"
CDS complement(4257..4577)
/codon_start=1
/gene="pemK"
/locus_tag="SJA_P3-00070"
/note="transcriptional modulator of MazE/toxin MazF /
growth inhibitor"
/product="PemK-like protein"
/protein_id="BAI99227.1"
/transl_table=11
/translation="MKRGDIVAVSLQGDYGKPRPALIVQSNLLAELESLVICPITSAV
RDAAFRITVEPDNANGLRVLSQVMVDKLSTLPRSKISKPFGRLDDERMKAVDRALLLV
VGLI"
CDS complement(4574..4795)
/codon_start=1
/locus_tag="SJA_P3-00080"
/product="hypothetical protein"
/protein_id="BAI99228.1"
/transl_table=11
/translation="MAAIKQRADKVDRHRQRMRAAGFRPVQFWVPDTRGADFAERVRQ
QCLKLKGDPAELDALRFVEEAAAQVEGWQ"
repeat_region 5214..5266
/note="5239..5266,5214..5241"
/rpt_type=direct
/rpt_unit_range=5214..5241
/rpt_unit_range=5239..5266
protein_bind complement(5290..5298)
/bound_moiety="dnaA"
/note="dnaA_Box mis1"
BASE COUNT 1024 a 1759 c 1533 g 1082 t
ORIGIN
1 gtgacagata cgcgcacctt gcccgccacc aagcctcagc ctagccgatg ggtccagact
61 gaccgtgcat cgcatgaggc ttgggcgcgc ttaagcgcat caaaccccaa ggctggggcc
121 ttactacatc tgcttgccgc tcgggtcgga gataataatg ctgttgtagt aagtcacaag
181 acattagcag aattgctagg ggttagatca attacaacta ttaagacagc aataactgca
241 cttgtttctg gaaattggat tgaagtcagg cggattggtg aaaacggcac tgtcaacgca
301 tatgtgttga acgatagagt tgtttggtct ggaccacgtg aagggctaag atacagccta
361 ttttctgcaa ctgtcgtcgt ctccgacagc gaacagccgg accgcgatac tttgggcaag
421 caagaaccac tacgccgcct tcccccgata ggtgagcgtc agctaccgca cggcgacgga
481 cttccccctc cttcgcaacc gttcctagat ggaattgagc ctgatctgcc cgccaccgaa
541 cagcagaacc tcgatccggc gatgcaagag gaactatccc agctcgtcat cggcctagga
601 aacaggctcc gcgcgcccga tgcctctccc cctgacgatg caaccgatat atagatacta
661 tacaggccga cttaacagcg agtgacatca tgggtatcac cctaagagaa gcatccgaaa
721 aggtcggtgt cacccgccaa acgctcatga aggcgatcaa gacaggccgg gtttccgccg
781 aaaaatccga taacggcgaa tggcgcattg aacctgtcga gctatttcgt gtctggcccc
841 ctgtaaatgg ggtgcagcaa cctttacagc ctaacataac aggcagtgac acccccggtt
901 tacaggctga aaacaggctg ttgcgggagc aggttgccga actgcgtgaa gaacggaacg
961 cttggcggga gcaagcccaa cggctcgccc tcaccgatca gcgcgctgtc tcgcagccca
1021 gctcccgccc cggcttctgg tcgcgcctgt tcggccgcca gggcgacagc cctagcggat
1081 agtgatgaat ccattgagaa aattgttgcg gtttcgcaac atattagaaa aaactcagtt
1141 gacctcaaaa tatttcttgt attttttagt ttagcagtta cccccccccc cccccccccc
1201 cgctagggtc gcgaaaatta gtcatgtttc gtgtttactt agggggttta ttaatgaaga
1261 agattattac ttgcgccgtt cttgcgtctg ccgctcttgc tacgcctgct ttcgcgcagg
1321 atgaagccga caagggtatg tatttccaac ttcgcaccgg cgttgctgac ctcaacaatc
1381 ccgatttcgc catcatcgac acatggtccg agccgaacaa tcgcctcgac acgaagctca
1441 acaccaagtc cgctgcaacc tttggcggtg agctgggcta tgatttcggc ggcgtccgcg
1501 tcggcctcga actggcctat cagcgcaaca aggtgaaggg catcacgctc aagagcctga
1561 acggcaccgc gatcacggcc gaggacctct ccgatgttgt cgaaggtctt ggcgaactcg
1621 acattatcag cgtcgatgat ttggacggcg ttgacattaa cggcaccacg atcagcgcga
1681 ccaacggctc cgtcgctaag ctgcgccagc tcgccgtgat ggcgaatgtc acctacgata
1741 ttccgctcgg cggcaacacg ttcaagccct atgtcggcgt gggcctcggc gcggtcggct
1801 cacacctcaa ggcgctgggc gaggatgacg gctcggttcg cttcgcatgg cagctccgcg
1861 ccggtgcagc cgtgaaggtg acgaagggca tcgatctgac cgccgattac acctatcgtc
1921 agaccggcag cggcaagctg aacttcgggg acgaggacgt ggaatatcgc ctcggtaaaa
1981 ccaaggcttc gctgtttcag gtcggtctgc gctttacgct ctgatccgcg accctctcaa
2041 atcgcgataa gtgagaaacc ctcctgctct gcgggagggt tttttcttgg ctatacgatc
2101 cgatcatatg cgaccgaatc atatatgatc ggatcgtata tcgccgtcac aagctcatgc
2161 cccggtcgcg ttgcaggatc agctcccgct caccgatgag ctgacccacg gcgcgcgcca
2221 ttttcggttc acgctggatc tgctcgatat aaagatcctt ggtgtgctgg ttggccccgt
2281 tataggcgtc caccgccttg cggagcgctt ccggggtcgc cttccagtcg ctgttatggt
2341 cgccatagcc atgcgcgccc gcctcgcgct tcccggcgat ggtattgaac ttctcggcca
2401 cccgctcgcg ttcccgcacc tgctggcgct cctgcgcttc ctgacgggcg cgatcggcgg
2461 ctagacgctc ctgcgcttcg cgggcgagtt gcacctcggc cgcctcgcgc cgatcgcgct
2521 cgaccgcacc gctcaagctg gccgcaacat cgtgcagcct gcccgcgatc cgctgcccca
2581 tgtctcgcag ccattccgtc ccgcgctcga tatactggcg caggccggcc cgctcgacga
2641 cgccggcgtt gtgctgacct accgccgtca ccggctcata ggcccgccct tcccgcgcgg
2701 ccacctgctc ggcccgccgc tccatcgccg tcgcactcgg ccccatatgc acggtgggtt
2761 cctgctcgat cccctgccgc tggtgactgc gatggtccac ccggtcgggg acgttcgcca
2821 gttccagcgc ccgattctgc atctcggccc atcgttcccg ccaccgctcg acctcgccgc
2881 tctgcttctg gtccagctcg cgcgtctttt cccccagccc ctcagggcca aggcggcgcg
2941 tcgtcgtcaa caggtgggca tggtgattgc gctggtcgcc ctcgcgacca ggtgcatgga
3001 tcgacacgtc caccgccacc ccatgccgct cgctgatttc ccgcgcgagg cccaaggcca
3061 gctcccggcg ctcgtcggcc gacagctcga cgggcagcgc gatttcatat tcccgcgcca
3121 cggtcgcgtt cttgcgcgtc tccgccagct cggccgcgtt ccatagccgc tcgcggtcgg
3181 ccgcccactc cggcgcgtcg gtcggcaaca tcagctcgct atgctcgacg ccctgcttgc
3241 gggtgtaatc gtggacgagg ccggtgcgct cgtccgtgat ttcgacgccc gcacgatagg
3301 ctgccgccgc cgtcgcgctg cgaccggcgg aacggcctat cgccttcacc gcaagatgga
3361 aactcgccat cgccgcgccc taccttgcca tgcgggagca tggcgcgggc gatagcccgc
3421 tggggtggag gggtatcccc tcccgcacgc aaacgcaagt ttgcataagt gcgcccttcc
3481 tctctttcgt tcagtcgggt ccggtgctat caatatcact cagcgaaagg attgtgcatg
3541 gccgctccga cgccagaggc tatcgaaaac gcccgccgca aggtcgaaca ggccaaggcc
3601 cggttgcagg cattggaagc gcgcgccgcc accctgaacc gcaaacagga cgcccgccgc
3661 aagatcatcc tcggcggcct gctcctcgat gccgcgatga aagaccccgc atgggaatcc
3721 cgcctcaatg acctgatggg ccggatcagc cgcgatcagg atcgcaaggc gttcgatggc
3781 tggaccttca agggcggccc cgccgatgcc tgacccgtta gaccccgctg agttcgacgc
3841 cccgccccct gccgatcccg gcgcggatta tcgcgtcctg ctcgatgcga tgcggcaggc
3901 cggggccgat gggatcgcgc agcagtcggc cgcgctggtc cagcggatcg agcaggacgc
3961 ccgccagcgc ctcgaatggg ggcaacggat gggaacggcg gtcgatgatc tccagcgcgt
4021 ggcggggcag ctccagcggg tcagtgccgg gatatggtgg gaccggctga aggaatggct
4081 ctcggccgcc ctgatcgggc tgggcctgat cttcgccgcg gccctcgcct accagtgggc
4141 gaaggaaccc aagattgaac agcggctata cggctgcacc gcacgatggg acgccaaaac
4201 aggcaagtgc aaaggcgact gggtgccgtt gcaggcaagg gaatgaccga cgcccttcaa
4261 atcagcccga cgacaaggag caaggcgcgg tccacggcct tcatccgctc atcgtcaagc
4321 cgcccgaaag gcttgctgat tttcgagcgg ggcagggtcg agagcttgtc caccatcacc
4381 tgcgagagca cacgcaaccc attggcgttg tccggctcga cggtgatgcg aaaggcagcg
4441 tcgcgcacgg cgctggtgat cgggcagatc acgaggcttt ccagctcggc caaaagattc
4501 gactgcacaa tgagggccgg gcgaggcttg ccgtagtcac cttgcaacga aaccgcgaca
4561 atatcgcctc gcttcactgc cagccctcga cctgcgccgc cgcttcctcg acaaaccgca
4621 gcgcgtccag ctccgccggg tcgcccttca acttcaagca ttgctggcgc acacgctccg
4681 cgaagtcagc cccgcgcgtg tcgggaaccc agaattggac gggccgaaac cccgccgcac
4741 gcatccgctg gcggtgccga tctaccttgt cagccctttg cttgatcgcg gccatgtgaa
4801 tctccatagg tatcatgcta agttacatga tacctctttg actgctcccc cgcaagttcc
4861 ttcactccga tttgcctctg gcgtcccgca ggggcgccgc cgagcctttg gatggcacaa
4921 aagccacccc caagcgcctc cctgcgtcct acgggccgga aatcgcctcc tacaccccct
4981 gatagcccgt aggaactttg ccgtaggaac tgccctttgc gggaatatgc gaccgtatga
5041 gctgggcgtc tccaacccat aacgcgcgcc gcgattagcg gcgctcattg ttcacttttt
5101 gttcctatct aaaggggctg cttcgccagc gcttaggtcc gcgcttgcac cccctttaga
5161 tcatatagaa gggcgagatt ttttattgcg taatttcaat gtgttggcgg gggggggtag
5221 ccagtagctg attggctagg ggtagccagt agctgattgg ctagggtctg tcgattttca
5281 ccaatttatt gtcgataatt gacgttgatt tttgataatt ttctggcgat aatcggacat
5341 agattgactg cccctagcca atctatgtcc gatttctcga cactggagtc acacccct
//