LOCUS AP008933 3637 bp DNA circular BCT 07-OCT-2016
DEFINITION Rhodococcus erythropolis PR4 plasmid pREC2 DNA, complete genome.
ACCESSION AP008933
VERSION AP008933.1
DBLINK BioProject:PRJDA20395
BioSample:SAMD00060932
KEYWORDS .
SOURCE Rhodococcus erythropolis PR4
ORGANISM Rhodococcus erythropolis PR4
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales;
Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group.
REFERENCE 1 (bases 1 to 3637)
AUTHORS Sekine,M., Tanikawa,S., Omata,S., Saito,M., Fujisawa,T.,
Tsukatani,N., Tajima,T., Sekigawa,T., Kosugi,H., Baba,S.,
Takei,Y., Terui,Y., Matsuo,Y., Nishiko,R., Ito,M., Tago,S.,
Fujita,N. and Harayama,S.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, NITE Genome
Analysis Center (NGAC), Department of Biotechnology; 2-49-10
Nishihara, Shibuya-ku, Tokyo 151-0066, Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Takarada,H., Sekine,M., Hosoyama,A., Yamada,R., Fujisawa,T.,
Omata,S., Shimizu,A., Tsukatani,N., Tanikawa,S., Fujita,N. and
Harayama,S.
TITLE Comparison of the complete genome sequences of Rhodococcus
erythropolis PR4 and Rhodococcus opacus B4
JOURNAL Unpublished (2009)
REFERENCE 3
AUTHORS Sekine,M., Tanikawa,S., Omata,S., Saito,M., Fujisawa,T.,
Tsukatani,N., Tajima,T., Sekigawa,T., Kosugi,H., Matsuo,Y.,
Nishiko,R., Imamura,K., Ito,M., Narita,H., Tago,S., Fujita,N. and
Harayama,S.
TITLE Sequence analysis of three plasmids harboured in Rhodococcus
erythropolis strain PR4
JOURNAL Environ. Microbiol. 8, 334-346 (2006)
COMMENT Rhodococcus erythropolis strain PR4 has been isolated from
the Pacific Ocean. This strain was capable of degrading
normal alkanes as well as branched alkanes as sources of
carbon and energy (Komukai-Nakamura et al., 1996).
This work was supported by NEDO.
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
The microbial strain and microbial genomic DNA clones used for
the sequencing project are available through the NBRC.
URL:http://www.nbrc.nite.go.jp/e/index.html
FEATURES Location/Qualifiers
source 1..3637
/db_xref="NBRC:100887"
/db_xref="taxon:234621"
/isolation_source="seawater"
/mol_type="genomic DNA"
/note="This strain is also named as MBIC01337, PR4."
/note="synonym: Rhodococcus erythropolis NBRC 100887"
/organism="Rhodococcus erythropolis PR4"
/plasmid="pREC2"
/strain="PR4 (= NBRC 100887)"
CDS 1..888
/codon_start=1
/gene="repA"
/locus_tag="RER_pREC2-00010"
/old_locus_tag="pREC2_0001"
/product="replication protein RepA"
/protein_id="BAE46344.1"
/transl_table=11
/translation="MKSATGGVLSDRQWADAVLLPHRPFATNNLQRGQYRMSRDDALA
MRYVEHSPHALLGSIVIDCDHVDAAMRAFEQPSDHPAPNWVAQSPSGRAHIGWWLGPN
HVCRTDSARLTPLRYAHRIETGLKISVGGDFAYGGQLTKNPIHPDWETIYGPATPYTL
RQLATIHTPRQMPRRPDRAVGLGRNVTMFDATRRWAYPQWWQHRNGTGRDWDHLVLQH
CHAVNTEFTTPLPFTEVRATAQSISKWIWRNFTEEQYRARQAHLGQKGGKATTLAKQE
AVRNNARKYDEHTMREAII"
CDS 888..1172
/codon_start=1
/gene="repB"
/locus_tag="RER_pREC2-00020"
/old_locus_tag="pREC2_0002"
/product="replication protein RepB"
/protein_id="BAE46345.1"
/transl_table=11
/translation="MGGAKNPVRRKMTAAAAAEKFGASTRTIQRLFAEPRDDYLGRAK
ARRDKAVELRKQGLKYREIAEAMELSTGIVGRLLHDARRHGEISAEDLSA"
CDS complement(1149..1679)
/codon_start=1
/locus_tag="RER_pREC2-00030"
/old_locus_tag="pREC2_0003"
/product="hypothetical protein"
/protein_id="BAE46346.1"
/transl_table=11
/translation="MVMAVNTTGTDRSPRPRWSLSEASKRTGVSRTTLLRRIEAGKIP
GAIKTDEGWSIGIEDLIGAGIIPDRPSPPEGAHGHGRPDFDHVQRIADLERELAVAHA
QRAAAEQVAVERERIIQSQAVTLLILQSKPVDDRPSAVADAAPEAEHHPPAGPSAERR
PEPDNPLTWLRRQIFR"
BASE COUNT 733 a 1189 c 1074 g 641 t
ORIGIN
1 atgaaatccg caacgggggg cgtgctgagc gatcggcaat gggcggatgc ggtgttgctt
61 ccgcaccggc cgttcgcgac gaacaacctc caacgaggtc agtaccggat gagccgcgac
121 gacgcattgg caatgcggta cgtcgagcat tcaccgcacg cgttgctcgg atccatcgtc
181 atcgactgcg atcacgtcga cgccgcgatg cgcgcattcg agcaaccatc cgaccatccg
241 gcgccgaact gggtcgcaca atcgccgtcc ggccgcgcac acatcggatg gtggctcggc
301 cccaaccacg tgtgccgcac cgacagcgcc cgactgacgc cactgcgcta cgcccaccgc
361 atcgaaaccg gcctcaagat cagcgtcggc ggcgatttcg cgtatggcgg gcaactgacc
421 aaaaacccga ttcacccgga ttgggagacg atctacggcc cggccacccc gtacacattg
481 cggcagctgg ccaccatcca cacaccccgg cagatgccgc gtcggcccga tcgggccgtg
541 ggcctgggcc gcaacgtcac catgttcgac gccacccggc gatgggcata cccgcagtgg
601 tggcaacacc gaaacggaac cggccgcgac tgggaccacc tcgtcctgca gcactgccac
661 gccgtcaaca ccgagttcac gacaccactg ccgttcaccg aagtacgcgc caccgcgcaa
721 tccatctcca aatggatctg gcgcaatttc accgaagaac agtaccgagc ccgacaagcg
781 catctcggtc aaaaaggcgg caaggcaacg acactcgcca aacaagaagc cgtccgaaac
841 aatgcaagaa agtacgacga acatacgatg cgagaggcga ttatctgatg ggcggagcca
901 aaaatccggt gcgccgaaag atgacggcag cagcagcagc cgaaaaattc ggtgcctcca
961 ctcgcacaat ccaacgcttg tttgctgagc cgcgtgacga ttacctcggc cgtgcgaaag
1021 ctcgccgtga caaagctgtc gagctgcgga agcaggggtt gaagtaccgg gaaatcgccg
1081 aagcgatgga actctcgacc gggatcgtcg gccgattact gcacgacgcc cgcaggcacg
1141 gcgagatttc agcggaagat ctgtcggcgt aaccaagtca gcgggttgtc gggttccggc
1201 cggcgctcgg cactcggacc ggccggcgga tggtgttctg cctctggcgc agcgtcagct
1261 accgccgaag gcctgtcatc gaccggcttc gactgaagta tgagcaacgt cacagcctgt
1321 gattggatga tccgctcacg ctcgaccgct acctgttcag ctgccgcccg ctgggcatga
1381 gcaacggcca actctcgttc aagatccgcg atccgctgga catggtcaaa atcagggcgg
1441 ccatgaccgt gggcaccttc gggcgggctg ggtctgtccg gaatgattcc agctccgatg
1501 aggtcttcga ttccgatcga ccagccttca tcggttttga tcgcacccgg aattttgccg
1561 gcttcaattc tccggagcag cgtcgtgcgg ctgacgcctg tccgtttgga cgcctcggac
1621 agtgaccaac gaggacgtgg cgaccggtca gttcctgtgg tgttcacggc catgaccata
1681 acgcgaattg tgcttgtcca ggcggaccac actcacgcgt gtaccgcttc tacttttcgc
1741 caatttcgca gtcgcccaac ccttttgcgg catgtaacaa gttgcagcgg ccagccgatt
1801 cgggcaagca tcgggttgct cgcttttaac tcgtgagcac cacgattagg ggaggaaact
1861 gtgatcggaa aacgagttct gacaatggcc gccgtgtgcg cagcaactac cggagttctg
1921 ggaatggggg tgggggtcgc aagtgcagac tctttgccgc cctctgtgtg ttcatctgca
1981 accggatgct ccggaaacgg aaacgcaaac cccatcaacg gcaccaacac aatcaaggat
2041 cgcgcgggct gcgctatcgg actgggtatg aatgcgttcc ccgctacctg gccggtacga
2101 gtaatcggcg tcggcgccgg cgcttacttc ggctgcaact agaaggatct ccggtcacgc
2161 acctaaagtt gcagtgtgaa cactcagaag agaaggcagt tgagctggcg ggccgcgctc
2221 ggcatcggtg tgttgtacat ccttgtcggc ctgttcttcc tcagcaacgg gacgacaacc
2281 gcggctgtca ttttcgtcat tttgggcgta atcacagcac tcgttccgtg ggtccagaaa
2341 tggtggacag cacgatccgc agtcaaacac tgacgcgata gaggcctgac ctagaaactc
2401 cccggatgac acgatgtcgt gtcatccggg gagtttcttt tgcgctcagt agcaagcagt
2461 tcagcggcat cggcgcttct cgcacacgca gtggcagcct attcgcggac gtggacagcg
2521 cggatgaggt ctgccagggc gcgccgggtt cggtcgtgtc gggggtcgtg tgtgagctgc
2581 ccggtgcgca cttgttcggt gagtgcggtg atcacttccg cacaggctcg ggggctgccc
2641 agcacgacgg gcaccgccgt catcggaaca ctcggcagta tcgcggccgt cgtcctcagt
2701 cgttgaccgg cccagcgcag cgccccggaa cgggcaccgc gccagcgcgg tcagacttag
2761 ggcacctaag gcactatctt gctccgccag tccgccgccg agctcctcgt gatcgctcgc
2821 gcacccgccc gaccagggcg gaatccaaaa ccccggggtt ttgcaatatc ttgctccgct
2881 cgaggtgacc gaacaggcga gaatttctcc gcgcaccacc gacacatttc gaccgaagga
2941 catcgatgct tccggaccga ctgaccgcgc tcgcctccgc cgcacacaac gccggagcac
3001 gtgagaacct ccacaacctc ggcggcgtcc accacgacgc acaccacgcc accctcaccc
3061 tcgatcgcta cacacccgag aagctcccag cgtcctcctg ggccgcgata ctcgaccacc
3121 acgcacgcac accgcactaa cgattcggcc ggcgctcgat tcggccggcg ctcgattcgg
3181 ccggcgctcg attcggccgg cgctcgattc ggccggcgct cgattcggcc ggcgctcgat
3241 tcggccggcg ctcgattcgg ccgagcagaa gagtgaacaa ccaccgacca cgcttccgct
3301 ctgcgcgccg tacccgacct acctcccgca gctcgagcag ctcccgggag taccgccgta
3361 ctcacccacc tgtgctcacc atccaccgac gcaaagccca acccgagcac acctcttgca
3421 ccaaggtgcc gaccgtggct ttccgctcgc agaggttcca gaagaaatcg aacgatccag
3481 cgcggcaagg ttcaaaaagc aggggttggt ggggaggaga ttttgggggt gtcgccggga
3541 tacctgatat ggctttgttt tgcgtagtcg aataattttc catatggcct cggcgcgtcg
3601 gactcgaata gttgatgtgg gcgggcacag ttgcccc
//