LOCUS AK375198 3931 bp mRNA linear PLN 20-MAY-2011
DEFINITION Hordeum vulgare subsp. vulgare mRNA for predicted protein,
complete cds, clone: NIASHv3087L02.
ACCESSION AK375198
VERSION AK375198.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Hordeum vulgare subsp. vulgare (domesticated barley)
ORGANISM Hordeum vulgare subsp. vulgare
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.
REFERENCE 1 (bases 1 to 3931)
AUTHORS Matsumoto,T., Kanamori,H. and Tanaka,T.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Takashi Matsumoto
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; Kannondai 2-1-2, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Matsumoto,T., Tanaka,T., Sakai,H., Amano,N., Kanamori,H.,
Kurita,K., Kikuta,A., Kamiya,K., Yamamoto,M., Ikawa,H., Fujii,N.,
Hori,K., Itoh,T. and Sato,K.
TITLE Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs
Derived from 12 Clone Libraries
JOURNAL Plant Physiol. 156, 20-28 (2011)
COMMENT This clone was obtained at our laboratory
Please visit our web site
URL: http://barleyflc.dna.affrc.go.jp/hvdb/index.html
FEATURES Location/Qualifiers
source 1..3931
/clone="NIASHv3087L02"
/clone_lib="Normalized barley full-length cDNA library
from malt"
/cultivar="Haruna Nijo"
/db_xref="taxon:112509"
/dev_stage="germination"
/mol_type="mRNA"
/organism="Hordeum vulgare subsp. vulgare"
/sub_species="vulugare"
/tissue_type="seed"
CDS 135..3761
/codon_start=1
/product="predicted protein"
/protein_id="BAK06393.1"
/translation="MSRRLSLPAGSPVTVTVSPTRGKAGGGGSPGDGVVRRGSGLTSP
VPRHSIGSSTATLQVSPVRRSGGSRYASRDGADASAEFVQYTVHIPPTPDRTTASAST
DAPAAEEEGEVLPQRSYVSGTIFTGGLNCATRAHVLSNSADGARPTASANMSCKMRGC
DMPAFLNTGRGGHPPCDCGFMICEECYMDCVAAAGNCPGCKEAYSAGSDTDDSVDEDD
DDAISSSEERDQMPMTSISKRFSMVHSIKMPMPSSNGNGGGKPADFDHARWLFETKGT
YGYGNALWPKNDHGGGSTAGATTGFVGIEEPPNFGARCRRPLTRKTSVSQAILSPYRM
LIAIRLVALGFFLAWRIRHPNPDAMWLWALSVTCEVWFAFSWLLDSLPKLCPVNRSCD
LDVLADRFELPTARNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEK
LACYLSDDGGALLTFEALAETASFARTWVPFCRKHGVEPRCPESYFGQKRDFLKNKVR
LDFVRERRKVKREYDEFKVRVNSLTEAIRRRSDAYNAGEELRARRRLQEEAVAAGGAL
GAAPLAETGAVKATWMSDGSQWPGTWLTGATDHARGDHAGIIQAMLAPPTSEPVLGGE
PAESGALIDTTGVDIRLPMLVYVSREKKPGYDHNKKAGAMNALVRTSAIMSNGPFILN
LDCDHYVHNSAALREGMCYMLDRGGDRVCYVQFPQRFEGIDPNDRYANHNLVFFDVAM
RAMDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRKKIKLFLRRKPTMGKKTD
RESEHESMLPPIEDDDHNQLGDIESSALMPKRFGSSATFVSSIPVAEYQGRLLQDMPG
VHQGRPAGALAVPREPLDAATIGEAISVISCFYEEKTEWGRRIGWIYGSVTEDVVTGY
RMHNRGWRSVYCVTRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFATRRM
KLLQRVAYFNVGMYPFTSMFLIVYCVLPAVSLFTGKFIVQHLSATFLVFLLIITITLC
LLALLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPG
GADDGEEDTFAELYEVRWSFLMVPPVTIMMLNAVALAVGTARTLYSEFPQWSKLLGGA
FFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLICMIVSLLWVYISPPAGARPGIGG
FSFP"
BASE COUNT 658 a 1293 c 1292 g 688 t
ORIGIN
1 ggatcgcgag gaatcggttt gagctgctga gcccccagtg cttgctgctg cttcgtgtgc
61 tgagcttctt gcttcttttg atcgtttgga gctttgagct gatttggagg aggcggaggt
121 gattcggtgg agggatgtcg cggcggctgt cgttgccggc gggatcgccg gtgacggtga
181 ccgtgtcgcc gacgcgaggg aaggctggtg gcggcgggag ccccggggat ggggtcgtga
241 ggagggggtc cgggctcacc agccccgtgc ccaggcactc catcggctcc tccactgcga
301 cgctgcaggt ctcgccggtg cgccggagcg ggggcagccg gtacgcgtcg agggatggcg
361 ccgatgcgag cgccgagttc gtgcaataca ccgtgcacat cccgccgacg ccggacagga
421 cgacggcgtc cgcgtcgacg gacgcgcccg cggctgagga ggagggggag gtgctgccgc
481 agaggagcta cgtctcaggc accatcttca ccggcggcct caactgcgcc acgcgcgcgc
541 acgtgctcag caactccgcc gacggcgctc ggccgaccgc ctccgcgaac atgtcctgca
601 aaatgcgcgg ctgcgacatg ccggcattcc tcaacaccgg ccgcggcggc cacccgccct
661 gtgactgcgg cttcatgatc tgcgaggagt gctacatgga ctgcgttgcc gccgccggca
721 actgcccagg ctgcaaggag gcctactccg cgggcagcga caccgacgac tctgtcgacg
781 aggacgacga cgacgccatc tcctcgtcgg aggagaggga ccagatgccc atgacatcca
841 tatccaagcg cttctccatg gtgcactcca tcaagatgcc catgcccagc agcaacggca
901 atggcggcgg caagccggcc gacttcgacc atgcccggtg gctcttcgag accaagggca
961 cctatgggta cggcaacgcc ctatggccca agaatgacca cggcggcggc agcactgctg
1021 gggccaccac cggattcgtc ggcatcgagg agccgcccaa cttcggtgcc cgctgccgcc
1081 ggcccctgac gaggaagacc agcgtctctc aggccatcct cagcccatac aggatgctga
1141 tcgcgatccg gctggtggcg ctggggttct tcctggcgtg gcgcatccgg cacccgaacc
1201 cggacgccat gtggctgtgg gcgctgtcgg tgacgtgcga ggtgtggttc gccttctcat
1261 ggctgctcga cagcctcccc aagctttgcc ccgtcaaccg ctcctgcgac ctcgacgtcc
1321 tcgccgaccg cttcgagctg cccaccgccc gcaatcccaa gggccgctcc gacctccccg
1381 gcatcgacgt tttcgtctcc accgctgacc cggagaagga gccgccgctc gtcaccgcaa
1441 ataccatcct ctccatcctc gccgccgatt acccggtcga gaagctcgcc tgctacctct
1501 ccgacgacgg cggcgcgctc ctcaccttcg aggcgctcgc cgagaccgcc agcttcgcgc
1561 gcacgtgggt gccgttctgc cggaagcacg gcgtcgagcc gcgctgcccg gagtcgtact
1621 tcggccagaa gcgggatttc ctcaagaaca aggttcgtct ggacttcgtc cgcgagaggc
1681 ggaaggtgaa gcgggagtac gacgagttca aggtgcgggt caattcgctg actgaggcga
1741 tccgccggcg ctccgacgcg tacaatgccg gcgaggagct gcgagcaaga agacgcctgc
1801 aagaggaggc cgtggctgcc ggtggcgcgc tcggagcagc tccgctggca gagaccgggg
1861 ccgtgaaggc gacatggatg tctgacggtt cccagtggcc cggcacttgg ctcaccgggg
1921 cgacggatca cgcgcgtggc gaccacgccg gcatcattca ggcaatgctt gcgccaccga
1981 cgtcggagcc agtgcttggc ggtgagccgg cggagtccgg cgcgctgatc gacacgacgg
2041 gcgtagacat ccggctgccg atgctggtgt acgtttcccg cgagaagaaa cccgggtacg
2101 accacaacaa gaaggccggc gccatgaacg cgctggtccg gacgagcgcc atcatgtcga
2161 acgggccctt catcctcaac ctcgactgcg accactacgt gcacaactcg gcggcgctcc
2221 gggaagggat gtgctacatg ctcgaccgcg gcggcgaccg cgtctgctac gtgcagttcc
2281 cgcagcggtt cgagggcatc gaccccaacg accggtacgc caaccacaac ctcgtcttct
2341 tcgatgtcgc catgcgcgcc atggacgggc tgcagggccc catgtacgtc ggcacgggtt
2401 gcatcttccg ccgcaccgct ctgtacgggt tcagcccgcc gcgcgccacc gagcaccacg
2461 gctggctcgg gaggaagaag atcaagctgt tcctgaggag gaagcccacc atggggaaga
2521 agacggacag ggagagcgag cacgagtcta tgctgccgcc gatcgaggac gacgaccaca
2581 accagctcgg cgacatcgag tcgtctgcgc tgatgccgaa gcggttcggc agctcggcca
2641 cgttcgtgtc gtcgatcccc gtggcagagt accaggggag gctcctgcag gacatgccgg
2701 gggtgcacca gggccgtcca gccggcgccc tcgccgtacc ccgcgagccg ctcgacgccg
2761 cgaccatcgg cgaggccatc agtgtgatct cgtgcttcta cgaggagaag acagagtggg
2821 ggcggcgcat cgggtggatc tacggttcgg tgacggagga cgtggtgacc gggtaccgga
2881 tgcacaaccg tggctggcgg tcggtgtact gcgtgacccg tcgcgacgcc ttccgtggca
2941 ccgcgcccat caacctcacc gaccggctcc accaggtgct caggtgggcg acggggtccg
3001 tggagatctt cttctcccgc aacaacgcgt tgttcgccac ccggcggatg aagctcctgc
3061 agcgcgtggc ctacttcaac gtgggcatgt acccgttcac ctccatgttc ctcatcgtct
3121 actgcgtgct cccggccgtc tccctcttca cgggcaagtt catcgtccag cacctgagcg
3181 ccacgttcct cgtcttcctg ctcatcatca ccatcacgct gtgcctgctg gcgctgctgg
3241 agattaaatg gtccgggatc acgctgcacg agtggtggcg caacgagcag ttctgggtga
3301 tcggcggcac gagcgcgcac ccggcggcgg tgctgcaggg cctcctcaag gtgatcgccg
3361 gcgtggacat ctccttcacg ctcacgtcca agcccggcgg cgcagacgac ggcgaggagg
3421 acacgttcgc ggagctgtac gaggtgcggt ggagcttcct gatggtgcca cccgtgacca
3481 ttatgatgct gaacgcggtg gcgctggcgg tggggacggc gaggacgcta tacagcgagt
3541 tcccgcaatg gagcaagctg ctgggcggcg ccttcttcag cttctgggtg ctgtgccacc
3601 tctacccctt cgccaagggc ctcctgggac gccgcggccg cgtgccgacc atcgtcttcg
3661 tctggtccgg gctcatctgc atgatcgtgt cgctgctctg ggtctatatc agcccgccgg
3721 ccggtgccag gccgggtata ggcggcttca gcttcccgta ggagagtact tggttcatct
3781 gaagaagctc gcatgaagga gtacttgctt catggagttc agttatcttt agtacgagtt
3841 gctgtttgat ggtggattcc taagcagctg agctcaactg ctgctttacc aagatattaa
3901 gacatgtcct agctatgtat gctatctaac t
//