LOCUS AK367962 2703 bp mRNA linear PLN 20-MAY-2011
DEFINITION Hordeum vulgare subsp. vulgare mRNA for predicted protein,
complete cds, clone: NIASHv2065K08.
ACCESSION AK367962
VERSION AK367962.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Hordeum vulgare subsp. vulgare (domesticated barley)
ORGANISM Hordeum vulgare subsp. vulgare
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.
REFERENCE 1 (bases 1 to 2703)
AUTHORS Matsumoto,T., Kanamori,H. and Tanaka,T.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Takashi Matsumoto
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; Kannondai 2-1-2, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Matsumoto,T., Tanaka,T., Sakai,H., Amano,N., Kanamori,H.,
Kurita,K., Kikuta,A., Kamiya,K., Yamamoto,M., Ikawa,H., Fujii,N.,
Hori,K., Itoh,T. and Sato,K.
TITLE Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs
Derived from 12 Clone Libraries
JOURNAL Plant Physiol. 156, 20-28 (2011)
COMMENT This clone was obtained at our laboratory
Please visit our web site
URL: http://barleyflc.dna.affrc.go.jp/hvdb/index.html
FEATURES Location/Qualifiers
source 1..2703
/clone="NIASHv2065K08"
/clone_lib="Normalized and subtracted barley full-length
cDNA library from seedling shoot and root on Aluminium
stress"
/cultivar="Haruna Nijo"
/db_xref="taxon:112509"
/dev_stage="seedling"
/mol_type="mRNA"
/organism="Hordeum vulgare subsp. vulgare"
/sub_species="vulugare"
/tissue_type="shoot and root"
CDS 528..2444
/codon_start=1
/product="predicted protein"
/protein_id="BAJ99165.1"
/translation="MLSMVYDDGGEVSSIYWPNPYFSYWQNSRKIYNFSREAELDSSG
HFLASDNATFDAADLGDAGVRRRLTLDTDGNLRLYSLDAGDGGAWTVSWMAFPNPCII
HGVCGINAVCLYTPSPACVCAPGHERADRSDWSRGCQPTFSNLTFGRDEQVKFVALPH
TDFWGFDLNNSEFLSLDACEAQCTGEPSCVVFQYKQGKGECYPKSLMFNGRTFPGLPG
TAYLKVPAGFSVPELLHIHQWQTDGLAIQEDIAGCDAAVPEVLLNVSSTARSSNQGKS
LWFYFYGFLSAFLVIEVFVIAFGCWLFSKKGILSRPSELLAVEEGYRMITSHFRAYSH
SELQKATRKFRAEIGHGGSGTVYKGVLDDDRTVAVKVLQDVSQSEEVFQAELSAIGRI
YHMNLVRMWGFCSEGAHRILVYEYVHNGSLANALFQSAGNSGGLLGWKQRFNIAVGVA
KGLAYLHNECLEWIIHCDMKPENILLDDEMEPKITDFGLAKLLNRDGSDSGLSRIRGT
RGYMAPEWVSSLPITDKVDVYSYGVLLLELMKGKRVSDWVVDGKDGLETDVRTVAKMI
VDRSKHGDGGWVADLVDERLDGQFHHAQAKTFAQLAVSCLEEDRNKRPGMKSVVLMLI
SADDESRDHEYPEI"
BASE COUNT 540 a 799 c 846 g 518 t
ORIGIN
1 cggcgggggc gcagcgcgag cggggcagca gcctgccccg tggcgcctcg atcgccgtcg
61 aggaccacgc ggccgacctc ctcgtctccc cggacggcgc gttcgcctgc ggcttctacg
121 ccgtctcccc caccgtcttc accttctccg tctggttcgc gcgctccgca gaccgcgccg
181 tcgtctggac ggccgccgcc agcgccacag cgcgccgcgc cgtccacagc cagggctccc
241 gcctcgcgct cgaccgccgc cacggcgcgc tcgtcctcac cgactacgac ggagaggtcg
301 tgtggaactc caccgcccac gacggcgccg cgcgggcgcg gctccgcgac accggcaacc
361 tcgccgtgga ggacgcccgg gggaccgtcc tgtggaagag cttcgaccac cccaccgaca
421 ccctgctccc cgcccagcgc gtcggcggcg ccgcggggag cggtctcgtc tccaccagca
481 ggctcctcgc ggctgggcac tacggcttcc ggttcagcga ctacgcgatg ctctcaatgg
541 tgtacgacga cggcggcgag gtgtccagca tctactggcc caacccctac ttcagctact
601 ggcagaacag ccgcaagatc tacaatttca gccgcgaggc cgagttggat tcctcggggc
661 atttcttggc cagcgacaac gcgacgttcg atgccgccga tctgggcgat gccggggtca
721 ggaggaggct gacgctggac accgacggca acctccggct gtacagcttg gacgccggcg
781 acggtggggc atggaccgtg tcgtggatgg cgttccccaa cccctgcatc atccacggcg
841 tgtgcggcat caacgcggtg tgcctctaca cgccttcacc ggcgtgcgtc tgtgcccccg
901 ggcacgagcg cgccgaccgg agcgactgga gcaggggctg ccagccgacg ttcagcaact
961 tgacctttgg gcgcgacgag caggtcaagt tcgtggcgct gccgcacacc gacttctggg
1021 gcttcgacct caacaacagc gagttcctgt cgctggacgc gtgcgaggcg cagtgcaccg
1081 gcgagccgtc gtgcgtggtg ttccagtaca agcagggcaa aggcgagtgc taccccaaga
1141 gcctcatgtt caacggcagg acgttccccg gcctgcccgg cacggcctac ctcaaggtcc
1201 ccgccggttt cagtgtgccg gagctactgc acatccatca atggcagacc gacggcctcg
1261 ccatccagga ggacattgcc ggatgcgatg ccgcggtgcc ggaggtcctg ctcaacgtct
1321 ccagcacggc gaggagcagc aaccagggca agtcgctatg gttctacttc tacggattct
1381 tgtccgcgtt cttggtcatc gaggtgtttg tcattgcgtt tgggtgctgg ctcttctcca
1441 agaaagggat actgtcgagg ccatcggagc tgctggccgt ggaggaaggg tacaggatga
1501 tcaccagcca tttccgggca tacagccact cagagctgca gaaggccacc aggaagttcc
1561 gcgccgagat cgggcatgga ggttctggca ccgtgtacaa gggggtcctg gacgacgaca
1621 ggacggtggc cgtcaaggtg ctgcaggacg tgagccagag cgaggaggtg ttccaggccg
1681 agctgagcgc catcggcagg atctaccaca tgaacttggt gaggatgtgg gggttctgct
1741 cggaaggcgc gcaccggatt ctggtctacg agtacgtcca caacggatca ttggcaaatg
1801 cgctgttcca aagcgccgga aattccggcg ggctgctggg gtggaagcag aggttcaaca
1861 tcgccgtcgg cgtggccaaa ggactggcat atcttcacaa cgagtgccta gagtggatca
1921 tccactgcga catgaagccg gagaacatac tgctggacga cgagatggag cccaagatca
1981 ccgacttcgg gctggccaag ctgctcaaca gagacgggtc cgactcgggc ctgtcgcgga
2041 tccgagggac aagggggtac atggcgcccg agtgggtctc cagcctcccc atcaccgaca
2101 aggtggacgt gtacagctac ggcgtgctgc tcctggaact gatgaaaggg aagagggttt
2161 cggattgggt ggtggatggg aaagacgggc ttgagactga tgtcagaacc gtggcgaaga
2221 tgatcgtcga cagatccaag cacggcgatg gaggatgggt tgcagacctg gtggatgaac
2281 gcttggatgg ccaattccat catgcgcaag ctaaaacatt tgcccagttg gctgtctcat
2341 gtttagagga agacaggaac aaaaggcccg gtatgaagag tgttgtgctc atgctcatct
2401 ctgcagatga tgagtccaga gatcatgaat atccagaaat ctgatccagt tcattctgga
2461 catgtgttag tgttaattgt tagtgttagt gtcagtgtta gtgttactgt gtgtatgtat
2521 acaaacaacc tttgtcacat caaattatat atattcctcc ttaaagaaat ataagagcgt
2581 ttaaatcact actttagtga tctaaatgct cttatatttg tttacagaga gagtagaaac
2641 tagaaccgca aattatgtct ttgtcaatgc atgacggcag aaatttacaa gtttacctgt
2701 tgc
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