LOCUS AK355919 2705 bp mRNA linear PLN 20-MAY-2011
DEFINITION Hordeum vulgare subsp. vulgare mRNA for predicted protein,
complete cds, clone: NIASHv1027N18.
ACCESSION AK355919
VERSION AK355919.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Hordeum vulgare subsp. vulgare (domesticated barley)
ORGANISM Hordeum vulgare subsp. vulgare
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.
REFERENCE 1 (bases 1 to 2705)
AUTHORS Matsumoto,T., Kanamori,H. and Tanaka,T.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Takashi Matsumoto
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; Kannondai 2-1-2, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Matsumoto,T., Tanaka,T., Sakai,H., Amano,N., Kanamori,H.,
Kurita,K., Kikuta,A., Kamiya,K., Yamamoto,M., Ikawa,H., Fujii,N.,
Hori,K., Itoh,T. and Sato,K.
TITLE Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs
Derived from 12 Clone Libraries
JOURNAL Plant Physiol. 156, 20-28 (2011)
COMMENT This clone was obtained at our laboratory
Please visit our web site
URL: http://barleyflc.dna.affrc.go.jp/hvdb/index.html
FEATURES Location/Qualifiers
source 1..2705
/clone="NIASHv1027N18"
/clone_lib="Normalized barley full-length cDNA library
from seedling shoot at low temperature"
/cultivar="Haruna Nijo"
/db_xref="taxon:112509"
/dev_stage="seedling"
/mol_type="mRNA"
/organism="Hordeum vulgare subsp. vulgare"
/sub_species="vulugare"
/tissue_type="shoot"
CDS 65..2476
/codon_start=1
/product="predicted protein"
/protein_id="BAJ87137.1"
/translation="MNEASSGLFRFIAGLARHQVVASTLGSFCILIFMLTGGFVLARE
NVKKWWIWGYWISPLMYAQNALSVNEFLGHSWNKTIPGFKEPLGSLVLESRGVFPDTK
WYWIGAGALLGYVLLFNILYTVCLTFLDPFDSNQPTVSEETLKIKQANLTGEVVEASS
RGRVNNSTIASRDTEDGSNDESTSNHATVNSSPGKKGMVLPFVPLSITFDDIKYSVDM
PQEIKAQGVAESRLELLKGISGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYIEG
NITISGYPKKQETFARVSGCEQNDIHSPNVTVYESLAFSSWLRLPANVDSSTRKMFID
EVMELVELSPLKDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
AAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPLGRHSCEL
IRYFEAIEDVRKIKDGYNPSTWMLEETSTTQEQMTGINFSQVYKNSELYRRNKNLIKE
LSTPPEGSSDLSFPTQYSQTFLTQCFACLWKQSLSYWRNPPYTAVKYFYTTVIALLFG
TMFWGIGKKRHNQQDLFNAMGSMYSSVLFMGVQNSASVQPVVAVERTVFYRERAAHMY
SPLPYALGQVAIELPYIFVQSLIYGVLVYAMIGFEWTVVKFFWYLFFMYFTLAYFTFY
GMMSVGLTPNYNVASVASTAFYALWNLFSGFITPRTRIPIWWRWYYWLSPIAWTLNGL
VTSQFGDVTEKFDNGVRVSDFVESYFGYHHDFLWVVAVVVVSFALLFAFLFGLSIKLF
NFQKR"
BASE COUNT 740 a 574 c 634 g 757 t
ORIGIN
1 gtatggcatt ggatttgatc ccaacgtaca gagatttttt agacagttcc tgctgctctt
61 tttaatgaat gaagcatcat ctggactctt ccgcttcatt gctggtcttg caaggcatca
121 ggttgttgca agcaccctcg gttccttctg catactaatt tttatgctca ccggtggatt
181 cgtcctggca agagagaatg taaagaagtg gtggatatgg gggtactgga tatcgcccct
241 gatgtatgcc caaaatgcac tatcggtgaa tgagttccta ggtcacagct ggaacaagac
301 aatccctggt ttcaaggaac cacttggaag cctagttctg gaatctcgag gggtttttcc
361 tgatacgaag tggtactgga ttggtgctgg tgccttgctc ggatatgtgc tgctatttaa
421 tatcctttat accgtctgcc tcacattcct cgacccattt gacagcaacc agccaacagt
481 atctgaagaa acattgaaga taaaacaagc taatctcact ggtgaagttg tagaagcatc
541 atcaagagga cgggttaaca acagtacaat agcatctaga gatactgagg atgggagcaa
601 tgatgaatca acttccaatc atgcaacagt gaattctagt ccaggcaaga aaggaatggt
661 cctccctttt gtacctctct ccatcacatt cgacgatata aaatacagtg tagacatgcc
721 acaggaaatt aaagcacaag gtgtggcaga gagccggttg gaactactga agggtatcag
781 tggttcattt aggccaggag tacttacagc tcttatgggt gtcagtggtg ccggtaagac
841 aacgctgatg gatgtgttgg ctggacggaa gaccagtgga tacatagagg gcaacattac
901 aatctctggc tatccaaaga agcaagaaac ttttgctcgt gtatcgggct gtgagcagaa
961 cgacattcat tcaccaaatg tgaccgtcta cgagtctctt gcattctctt catggctccg
1021 gttacctgcc aatgtcgatt catcaacaag aaagatgttc attgatgagg tcatggaatt
1081 agtggaactc tcccccttaa aagatgcatt ggttggatta cctggtgtga gtggattgtc
1141 gactgagcag aggaaaaggc taacaatagc agtggagctg gttgctaacc cttctatcat
1201 tttcatggac gaaccaacat ctggacttga tgcacgtgca gccgccattg tcatgagggc
1261 aataaggaat actgtagata caggaaggac agttgtttgc accattcatc aaccaagcat
1321 cgacatattt gagtcttttg atgagctctt cctgatgaaa cgaggaggtg aagagattta
1381 tgtaggtcca ctaggccggc actcatgtga attgatcaga tattttgagg ctattgaaga
1441 tgtcagaaag attaaagacg gttacaatcc ttcaacatgg atgctggaag agactagtac
1501 aacacaagaa cagatgactg ggattaactt cagtcaagta tacaagaatt ctgaactata
1561 tcggaggaac aaaaatctaa taaaggagct aagcacacct cctgaaggtt caagcgacct
1621 atcctttcca acccaatact cacaaacttt cctcacacag tgtttcgctt gcctgtggaa
1681 gcaaagcctg tcatactgga gaaaccctcc atatactgct gtcaagtact tctacactac
1741 agtaatcgca ctgttgtttg ggacaatgtt ctggggtatt ggcaaaaaaa gacacaatca
1801 acaggacttg ttcaacgcca tgggttccat gtattcctca gttttgttca tgggggtgca
1861 gaactcagcc tcagttcagc cagttgtagc tgttgagcgc acagtctttt acagagaaag
1921 agcggctcac atgtactcac ctttgccata tgcgttggga caggttgcaa ttgaacttcc
1981 atacatcttt gttcagtcct taatatatgg tgtgctagta tatgctatga ttgggttcga
2041 gtggacagtt gtcaaattct tttggtacct gttcttcatg tacttcactc tagcttactt
2101 cacattttac ggaatgatgt cggtgggcct gactccaaac tacaacgttg cctctgttgc
2161 ttccacggca ttctatgctc tttggaacct tttctcggga tttattacac caagaactag
2221 aatcccgata tggtggagat ggtactactg gctcagccct attgcatgga cactcaatgg
2281 tctggtcact tcacagtttg gagatgtaac cgagaagttt gataatggcg tgcgggtatc
2341 cgattttgta gaaagctatt ttgggtacca tcacgacttc ctgtgggtag tagctgtggt
2401 ggtcgtctca ttcgctcttc tctttgcttt cctcttcgga ctctcaatca agctattcaa
2461 cttccagaag aggtaagtga tcaaggaaga ccatatccgg gtttgatgag cgcccgatac
2521 gcagagacaa cacataggac caggtccttg taattccact ggagtaaatg tgaatactag
2581 catagtagca tagcatatat tttgggagca cggtgcccag atcgaatgta tagtgacagt
2641 gcacattgtg cccagtgccc taggaattca gttttgcaag ttgtataaat caagtgattt
2701 gccac
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