LOCUS AK318547 2628 bp mRNA linear PLN 06-NOV-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J075125B17, full insert
sequence.
ACCESSION AK318547
VERSION AK318547.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2628)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2008) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2008)
COMMENT This clone is one of the 103 full-length cDNA clones from japonica
rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: NIAS STAFF Institute Sequence
group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K.,
Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2628
/clone="J075125B17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="40 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
BASE COUNT 610 a 722 c 722 g 574 t
ORIGIN
1 ggcgcacacg acccccccga cccgacgccg ccaccaccca cccccgtcgc agcagctcac
61 ccccacctcc accgccatag ccatagccaa gccgcgggag ctccaatccg agtcgacccc
121 ggcggattcc ggcagggcta ggcgcgaatc cctcgccgcg gcggccgcct gcatcgatcc
181 ggggcctcgc gggagggggg ggaccggatt tagggtttaa tttatgcatg gcctcgtccc
241 ctcctggcgc cggcgccggc ggggaggagc ggcccgcggc gagccccgcg gccccggccg
301 tggcggaggc ggtggaggag gggccggtga cgtcgcggtg ggcgccggag atcagggtgt
361 accggcgcaa gtacccacgc aaaaacccta aaccccctcc gaaccctagc cctagctcca
421 gccccctcgc gcaaacccta gcctcgattc ggaggtcgat tcgccgcccc gaggatgggc
481 ctgcggcgcc tcggcctgat ccgcccgccg cgcccgcttc ctccccccat ccccctccgc
541 cgagcgcccc ggttgccccc gcgcagcagg gggagcccgc cgcgcccgct tccgacgacg
601 tctccgcggg gcctaatcgg gacggcgggg ccgttcccaa cggccatgga gacgtccggg
661 cggccgccga ggagaaggcg cggaagcgga gggcgcggag cgagctgcgg cggcagcttg
721 cgtcggagct cgaccaggtg cgtgggcttt ccaagcggct gaaggcggcc gctgaggcca
781 tcgcggctga gtctgcagcg gcccttgctt tgcctgtggt ggtgccgccg cctcagcttc
841 ctgttgggta tgcgcactcg cagttcgcac tcgctgatcc tgtgacgccc atacctggtc
901 aagttgctgg tgctattgtt ccggtccgct cagtgatgca gcgcgggcca ctaaccgtgt
961 cagtgactca cacagagtcc ttcgagaagg agaagcggac accaaaggcg aatcagttgt
1021 atcaaaattc agagttcttg cttgccaagg ataagtttcc gccttcagat tcacatggtc
1081 gtaagaaacc caagcaccac aagaagaagc atcgttcctt agcatctcat ggtgctggtt
1141 atgatgctga gcagaggcta tactctcatg cttttaagaa atctatgtcg ctgctttcta
1201 ggctaatgaa gcacaaattt ggttgggtgt ttaacaagcc tgtagatgct gttgcgcttg
1261 gtttgcatga ttattttgct attatcaagc acccaatgga tcttggcacg ataaagaccc
1321 gactcacgca tggccagtac aggaacccga gggagtttgc tgatgatgta cggctgacgt
1381 tccataatgc catgacctat aatcccaagg ggcaggatgt gcatttcatg gctgagcagt
1441 tgttgggaat ctttgaggcg cagtggcccg aaattgaggc tgaggttcag taccttgcct
1501 catgtccgcc attgccaaat aagtttccac ctccaccaat tgacgtgcgc ttccttgatc
1561 ggtcagattc tgtaaaacac catatggtgt tggactccaa gtcaaggcca ttaagtcata
1621 ctcccactta tagtgccagg actccatcga tgaagaaacc aaaggccaag gatccggata
1681 agagagatat gacaatagat gagaagcgga agcttagtaa caaccttcag aatttgccac
1741 cggagaagct tgatgttgtt gtgcagatca ttaagaacaa gaatctgtct gttagacagc
1801 atgatgatga gattgaggtt gaaatagata gcatggatac tgagacactt tgggaacttg
1861 atagatttgt ggccaactac aagaagaacc tgagcaagca aaagaggaag gctgagcgag
1921 ccatgcttgc aaggcaggat gcagagttgc atgcacaaca tgttgcccca caacaaccaa
1981 gtcaagagcc taatattggt gtaaaatctc caaagcaaaa tttgattgtg gatgagaaat
2041 tagctacttc tgtgccagaa caagctgata ataatggaca aaatgcaagt agatcgagca
2101 gctctagcag ctccagcagt gatacaggat cctcttctag tgactcagac agtgatagct
2161 cctcttcaga tggatcagat gccgccaatt catcttgaaa tattcagaac ttcatccaat
2221 gaagaataac tgtctaattg tatttggcat gacaatgcct cagcaagact caagacatgc
2281 ctatcttcgt ctatctagga aatctccgag ttgcagctag gatgtcatcc gaaggcagga
2341 ttctgcaaag gcctgctgag cctgatacaa gttccattct gctgcttctg tgtacttatg
2401 attgtaggtt aactttgtac actagtccat tttcatttgt ttggcagcag agtgcagctg
2461 tattatatgc accttggcat tatggatacc cccagctgaa ggcaaggtat tcactaggct
2521 cagatccaat aagacaggca tgcatgctga cgctgatctt atctgggtag gagttctgta
2581 gcctgtagat tagccacagc tggagcatta tttacgtttt gccgcgtt
//