LOCUS AK289251 3820 bp mRNA linear PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100081E23, full insert
sequence.
ACCESSION AK289251
VERSION AK289251.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3820)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2007)
COMMENT This clone is one of the 1.9K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3820
/clone="J100081E23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="Unmapped clone to TIGR pseudomolecule version 5.0"
/note="in anaerobic condition for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
BASE COUNT 926 a 867 c 1097 g 930 t
ORIGIN
1 ggggccattc gaaatcccca acaccagtag ccggccgcgg catgcagttc ctctcgctct
61 ccgccgccgc cgcctcctcg ccggcggccg ccgtcctccc accgaagcca ttcaaacccc
121 tctcctccgc ggcccccttc cgtcgcccct ccccgcctcc gccgcctccg tccccggtgc
181 cctcacccgc gccaccgcca ccgccgcatc gcccttctcc ttctcctccc ccgaaccccc
241 tctcctccaa gctatggctg tccagcaagc tctccccgcc gccccccgag acactagagc
301 agccagagcc ttctactact actactacta ctaccccgcc gccgccggaa ccggaggcgg
361 aggcggaggc gcggcggcag gaggaattcc ggcacaaggg gaaggtcttc gtcgggaacc
421 ttccactgtg ggccaggaag gcggagatcg ccgagttctt ccgccagttt gggcccctgg
481 agaaggtcga gctcgtgcgc ggccacgacg atcccgagcg caacgtgggc ttctgcttcc
541 tatactacgg aggcgacgac gcggacgccg cggcggagcg tgcggtggag gttgacgggg
601 ttgacttccg tgggaggtcg ctcaccgtga ggcttgacga cggcaggaaa gggagggcca
661 gggctgagca gcgggcgcgc tgggtgaacg acggccggag gcgcgagcca cggtcgccgt
721 ggcacgaggg cagggacgag gcgtgccgtg agttccgcag ggtggtggaa tcacggcccg
781 acaactggca ggccgtcgtc tctgcattcg agaggatacc caagccatca aggagagaat
841 tcggtctgat gattgtttat tatgccaagc gaggtgataa gcatcatgct cgtgcaacat
901 ttgagaacat gagagcaaga ggaatagagc ccaatgcatt tgtttttaca agccttgttc
961 acgcttatgc agttgctaga gatatgcgtg gagctctgtc ttgcgttgag gaaatgaaat
1021 ctgagggtct tgagctgaca attgttacct acagtatcct tatttcagga ttcgccaaaa
1081 ttaatgattc ccaatctgca gataacttgt tcaaagaggc taagaccaag cttagcagtc
1141 tcaatggaat catatatagt aacatcatac atgctcactg tcaatctggc aatatggaac
1201 gggctgaaga actggtgcgt gaaatggaag aggatgggat agatgctcct atagatgtat
1261 atcacagtat gatgcatgga tataccatca ttcagaacga aaataaatgt ctagttgtct
1321 ttgaacggct taaggagtgt ggctttaaac catcaataat ctcttatggg tgccttctta
1381 atttgtatgt caagataggt aaggttgcca aagcattatc tattagcaaa gaaatggagt
1441 cttgtggcat caaacataat aataaaacat actctatgct tatcaatgga tttatccatt
1501 tgcacgactt tgcaaatgct ttcgccatat ttgaggaaat gctaagatca ggtctacaac
1561 ctgatcgtgc catatacaat ttgcttatag aggcattttg taagatggga aacatggatc
1621 gtgctatttg cattttggaa aaaatgcaga aggaacgaat gcaaccatca aatagagcat
1681 tcaggcctat catagaggga tatgcagttg ctggtgatat gaaaagtgct ttggatactc
1741 ttgatctgat gcggcgaagt ggttgtgttc ccactgtaat gacttacaat gctctcattc
1801 acgggctagt tagaaagcac aaggtatttt tcaagtacat gctagtttct tcaaatctaa
1861 tcctgtcatg tggcatttac tttaaatttg tgtttatagg ttcaaagagc tgtctctgtg
1921 cttgataaga tgtccatcgc tggcattaca ccaaatgagc atacatacac aatcattatg
1981 agaggttatg ctgccagtgg agatattggg aaggcttttg aatacttcac caaaataaaa
2041 gagagtggtc taaaactcga tgtgtacatt tatgaaacat tgctcagagc ctgttgcaaa
2101 tcagggagga tgcagagtgc cttagcagtc actcgtgaga tgagcttcca aaagatacca
2161 aggaatacat ttatatataa tattttgatt gatggatggg ctcggagagg tgatgtttgg
2221 gaagcagagg acttgatgaa gcagatgaaa gaagatggtg tccctcctaa catccatact
2281 tatacctcct atataaatgc atgctgcaag gcaggagaca tgcagagagc agaaaaggtg
2341 attgaagaaa tggtagatgt tggactaaaa cctaatgtca agacatatac taccttgatt
2401 aaaggttggg caagagtgtc acttccagac agggcattga aatgcttgag gagatgaaac
2461 ttgctgggtt gaaacctgat gaggcttctt atcattgctt ggtgacttca cttctgtcaa
2521 gggcaactgt aatggaggga agtacctaca caggaatcat tagtgtctgt agagaaatgt
2581 ctgagaatga tttgactgtt gatcttcgca ctgctgttca ctggtctaga tggcttcaca
2641 agattgagag gactggaggg gcactaacag aagcgcttca gagaatattt cctcctgatt
2701 ggaattcatt agaattttta ggagagccat ccagttctat aagcatgggg gagtctgatg
2761 attacagtga ttcagatttt agcggtgatg aagatgagga tcataatatt gatgatagct
2821 gaaaaactct agattccaga gcctgttttt cttgttctgt gccctcactt tttgtccttt
2881 ggttctgcca gagtggatga ccgaacaagc aatgtctttg atcaaactgt gccctcacat
2941 tcagacacca gtggcttgtg gactatccaa gagcgtttgg aatcttatag tgcaataagc
3001 gtgagctggc tggcctctgc tgcgtttctt caagagcaac agtcagtaac agttctactg
3061 ggactgaaga cacaggctgt caatgcaaca gacgaagctt actcagttat gcgtgtagct
3121 gtacatatca atggctggca cagagaggcc aacaggagct ataaaatgat gttccgattg
3181 ctgttaatta cctggaaact gtactgtact gggcgagtga tgaaggtagg atggaagcgc
3241 caagctgctg tgaacaactg agggaaaatt cagaggcagc cggcggcggc gggatggagg
3301 ccgggcgcag gctagcggcg gcgggatgga ggtcgggcat gggctggcgg cgggcggccg
3361 gtggcggcgg gatgaaggcc gggcgcgggc tagggctggc ggcgggatgg cggccgagcg
3421 cgggttgagg ctggcggcgg ccggccggcg gttgcggccg agcgcgggct ggggctggcg
3481 gcggctggcc ggcggcgacg ggatggcggc cgggcgcggg ctggggctgg cggcggtccg
3541 gcgcgggtcg gcgggatgga ggccggtcgc cggcggcctc gccccccccc cccctcccct
3601 agatccggcc ggatctggag cggcgggatg ggtggccggc cggcggcggg atgggaggcc
3661 gcccggtgag tctttttttt gatttttttt atttgtggtt tggatgtttt tatctgtgat
3721 tgaatgtatg aatctgtgat gtggtgactg agtatgtgac tcgatgttgt caatgaacct
3781 atgaatcaat attgtgaata tatttgtgat gttgtgaacg
//