LOCUS AK289110 4891 bp mRNA linear PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090096N10, full insert
sequence.
ACCESSION AK289110
VERSION AK289110.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4891)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2007)
COMMENT This clone is one of the 1.9K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4891
/clone="J090096N10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
BASE COUNT 1705 a 906 c 762 g 1518 t
ORIGIN
1 ataaatcaat taatactcat tgcttctaat gatctaatat atatatctta aatatacttc
61 aaaacaagca cctaaaacaa tcgatcattt taattttcag gtggtggaaa gatctttatg
121 gatatgtcga gctaagtcat gttagagatc gtgcagtgga gtcatatctt tggtcctatg
181 cgctattcta tgaagaaaac ttaacactca cacggatgat ccttgccaag ataattgtat
241 tcattgtcct tatggatgac acatatgatg atcatgccac catcgaggaa tgcaggaagc
301 tgaatgaagc catacaaagg tacgattaat taataggtca aaaacaacag aaattaatat
361 ccttcatctc aagccaccaa ttgtaagaga aatcaagaaa accgcacaac aaattatatt
421 taaaagttct aaagtttcac agaatattat aatatgttaa agatcaggct tttcaaaatt
481 gaaaggtaca gatgatcaaa tcagaagccc aaaaataaat caaaatttaa ctattctacc
541 cctatacctg taaatctgaa tcaattaaaa cctctaaccg ctatgcatga ccgtgtgata
601 taacctcata tacttaaagt aatttctatg gaaaaatata cagagataga tagaaagagg
661 gagagagaga gaacgtgcta ttgcgtaaca cgtagcatgt tgtttaacta agcaatgtgt
721 cacacgcgtg cccatcgatc ctctgcacct ctcccacccc ttcattagct accctctgcc
781 cctcccatgc agattcaata ttttgtgtat ttttggaaga ccctacctat acttttactt
841 ctagatggga tggggagggg atagattggg atggttgtct ctgacgcatt gtctagatgg
901 ccaaaagctg gcagtctttt tatttcaata ataggcacat gcacattttt catcgtaacc
961 actacaaacc atttccgtgt ccctatgaag atgactaatg ccgcccaggg tcatataaca
1021 aaagaaaact atttctacag atagctcctt atgaaaaatt gcatgtgaaa ataggtctat
1081 taacacaaat gggtcgcgta atttgaaagg tggggtcatt tttatatacg gatcttataa
1141 gaaaaaatca ataaaattga tttttaaggg cagttctatt aggaaaccac ttgtaactct
1201 ttcctatgat gtcgcctaat gacaaatgtt atgtgacaat tgtagttctt gttgagatgt
1261 tgtagttaat gtttttctat tttaggtagt taatgggatc aaaagttcat tataagaagc
1321 tttaaggtct acattagaat tttttgttac atacgttgac gggtacaatt tctataaaac
1381 aatatagcgc tcgacaaggt ttgtaacttt ctagtcaaag ttatttcatt taagaacact
1441 taggtgccga aatattcgtt tcaaattcgg aatctacttt ttaaaaaagg atgattttac
1501 aaacagatct ttatgaagtc taaagtttta aaattcatag aaaatacacc ttaagtccaa
1561 ttgagttaat ccaaagttct atgagatcct tacaatattt cctcaaatat ggcctagtca
1621 attttttttt atatttcctt tattatgaac attcacaaat gtcaagttgc ataacacatc
1681 aaaacataca gtgggaactt gacataagtg aacaatgata ttaccaaaat atggacctta
1741 caaatttaat gaaaaaattg ttgggatcat atataacttt agttcacctc aatcgcactt
1801 caaatgaaca ctacataaat ctttaaggtt ttaatatgtg ttacaagttt aagagagttt
1861 aaattagaag atcaacgtct atttcatagt aattaacaaa gtgcttcata tgtaagatgg
1921 taataagtaa gatacacgtg aagggagaga tcccggattt gaatcctaca tactagatgc
1981 atattttgtg tgaaaaaatt gcgaacttgt gacaattaaa atatgaaata ctttttgcgc
2041 ctacaataat taaagacttg aaagtcgaac ttaaaataca aaaaaataga tttgttaaca
2101 tgcagttgtg caatccacta gcacaaaact gtcgatttct ataggcccta tgtaacattt
2161 ggttggctaa acacttccaa aaatgggggt accaattata ttgtaactgc ctataaaagt
2221 agttttccga gcattcaaca ttccacctct aattctagag cagcaaaaca tgcgagtttt
2281 tccaactact atgcaatgac caagcagagt accgctcatg catacacata tattctactg
2341 tcattctatc aagaaacagc taaggccaac ttttagttaa ttaaaacaga gatgtgcaac
2401 tggaggtaga gctagctaca actaccaaag gtagctggca tcagtattct tgttaccgag
2461 ctgttgctgc cagcatgata tgaaccaaca atttccatga acccgagcta cttagagcaa
2521 ataaaaaaga aattgtttat tttacctttt gatgtttaat gcacctaaac aattaatctg
2581 agtaaagcac aactgaaaaa ccatgttgat cctctaacta aataaatttg ttgtacagtt
2641 accatcgaat ttatcgatca ctatacatct caattaatta tggtcacgcg tttcacacaa
2701 tgttaacaag tctttcattc gagaaatatt aaacatcatc aaaccacttt attcgtcact
2761 ggtacatggc gtgtccattt gagcataatt tacaaagtat ttcattcatt tatttgtggt
2821 ttcaacgcga tacatccctg tcaaactatc tttttcggct agatttattt acacttgcct
2881 aattaagtaa tttcataaaa attcccaatt ggcctattgg acagatggga tgaaagtgct
2941 atctcattac taccagagta catgaaaaag ttctaccgtg cactgcagaa ttacttcagg
3001 gagactgaag ctcaagtaga ggccagtgac aaataccggg tgacctgcat gaaaaaagag
3061 gtataccagt tatatatgta ctgcatcttt ccacttttat ttcctgtatt tgtttaaatc
3121 ttcatattat gcattgatcg ttaatggatt cttcttactg tatgttatcg atatatacca
3181 agaaaagatc gtgtgcacca atgaaatttg tcatctattg gaataaacta tccacattta
3241 ttatatattc aatataagag catcaccaac agttcccaaa attctatccc cgaaatcttt
3301 tgtttaaatc actaatgaga aaattttggg atagaatcta gggctaactt ttcaccacca
3361 aacctaaaat tttgaaacca tattgaacat ctattactga tagaaaatcg taataatcca
3421 ggtaccaata cttatagctg tatgctcaac atgaatttgt taaaccatgc ctaaacgata
3481 acacacgtgc tttttcatcc tcactttatg taaaatgttt agtaagtgtt gctagaactt
3541 ggacaactag atacgtaaac ttgtgtaacc ctcccaaaat tagcatggta ggactaaact
3601 tctcatttca tactgtacac acgtagactt ctatgcacta cgagacttgt gccaacccta
3661 cggatcaaaa attgtcagaa aaatagggtt tatccataga aattgtattt ttgagggaac
3721 cgacaagaat tgccgataga aaaatcacaa cggagaaatt agattttcct atgggtttcc
3781 ctatgtgttt aacacagaaa aattccattg gcatcgggtt ttgtcgccta aattgtgacg
3841 tgctgccgtc aggaaaaaag atcatgtggc accataaaat aaaatggctc caagacaacc
3901 tcccgccccc ccccccaaca attcaatcca catatccata tggattattg aacataactt
3961 tttcaacaaa atatgcaaat gaactctttt ttttttactg atacataagt gataaagcta
4021 cagataggca tgcacaacaa ttcagcatca aattttaagc aaacttcaat cctgtaagtt
4081 atataaccaa tacacgtaca tgccaattca catcaacaag aatcttttat tcaccactat
4141 aagttacaag ttatggtact acatgtcctc cggcagcaat attccaagct agatgagaca
4201 atgaatgcag atatcttatc ccttttcaat gcatttttat ctctatctat tttctcctct
4261 ttacttgcct tgagaatact acagattatg gtaaaaatat atcaaggtat aggagacaca
4321 caatattgta agctgatcaa taagatcctg ctatatgctt aaaaagttgt ggttcatgag
4381 gatactacaa acagcataat attgaataca tgtaagtaac tgtcagtcta acaattccaa
4441 ggatataaat aactgattaa tcatatggct gctattatca tgctttaatg ttctatacta
4501 tttatgaaat tcatatatta tttagcccaa tagcttaaat ggaattatct gccatatcaa
4561 tctagctagc aggaagcaca attaacccat agcttatact taatctaatc gtattccagc
4621 gggctttgca caaaatatat atccttcact gacacacgaa ctacatatcc ttaacaagat
4681 ggacagggac tgaagataca cgcaaaataa tgaactagct agagacttta agtgcataca
4741 tcgatctaaa tatgttgttt tttaatcata acaatattag aagaaaccaa gggaaggcca
4801 tggctttttt ctacaatagg aaactatgaa gtcacaacct ctcagcattc aagcacctta
4861 cttaatacag tagacaaaaa tcattcgaaa g
//