LOCUS AK288609 5845 bp mRNA linear PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090053H14, full insert
sequence.
ACCESSION AK288609
VERSION AK288609.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 5845)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2007)
COMMENT This clone is one of the 1.9K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..5845
/clone="J090053H14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="5 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
BASE COUNT 1662 a 1111 c 1160 g 1912 t
ORIGIN
1 ggcggatttg ggagggggga agcggcggcg gcgacgaagc acatgctggc cttccacttc
61 ctgcgcgcgc tgtcgcggat ccaccgggcg acacccgtga cgcggcgcac gcggaccatc
121 cgccgggcgg cctactcctc catggcgcgg gcggcgagcc cgcgccgcgc gtggagccgg
181 gcgctgctcg gccaggtccg cgcgcggagg tccaggacgc tgatgaggcg cgccgccgtg
241 ctggtgcgga ggcgcgtcgt agccgctcct gcgccttctc ccgcctccgc cagaggcgtc
301 aggattattg ctgccggaga gacgtcggcg gcggctcggg ctgttccgcc gcctccgcgg
361 cagcagggcg agccgccgag ggccgaagcg ctccggcgcc tggtccccgg cggcgccggc
421 atggagtact ccagcctcct ggaggagacc gccgactacc tccgctcgct tcgcgcgcag
481 gtgcagctga tgcaaggcct cgtcgacctc ttctcctacc aatgatccat ccatcgagta
541 cgtcttctat ctgattgggg aagaaacagg taattactta atcaaagaac ttaacaatga
601 ggtcatagat gaatggatgt tgcatatata tcatgcatga taatctgcat gtgtgcagat
661 tcgttttgtt ctagtagaat taagtattaa ttggttgcta gctagctgca catgcatgat
721 gcatatgtgt gtactacctc tatatcatcg ttcccatgca tccgctactc gtattagcta
781 gggattgaca gctagatgat gctccattag ctagttgttg cctagcttgt ctaattagac
841 tattagagta ctgctagctt gctaactagg agggtggtta tgttgaattg gttgtttggt
901 agagtgtttt ttcttttctc ctctctcaaa tttgggaaag tgggagccac aatctatgag
961 ggatagggtt gctaatcttt gagcttgatg agaagacaca cataacttgt ggccaaagga
1021 accaaacaaa agacattctc tccatgggcg gttagcatct tttgattaaa gggccttgtg
1081 tttttccctt tggaaataag catatatgta tttgtgtttt tgctattatt tttcttctct
1141 cttcttgttg cccttccatc atctctctct accaacttat ccctgttcct ttttaggtgc
1201 caccggttct ctattgagta ttctttgtgt acttgatgct gctggcaagt ttttctgctt
1261 ggctcttttg tcgtgttttt ttttctctca gttggctagc tttgacacat gcgtttgttg
1321 cttcctttat ggggtaagaa tccgaaaggg ttgaagctag cctcttctgc ttgtaagctt
1381 cctattaagt gttatgttac atcgggatca tatatatatg tacaacacaa acagtagtta
1441 atcaactgga cgtagaaaaa gactagctgg taccatgcaa gtttgacatg catggttgaa
1501 accacattct ttacttttac ttaactgata taataatata gttaagtctt ttgcatgtcc
1561 ctgaaaaaaa aaggtaaaaa gatacagacg aagcagatgc aaagaatctt agtagaacta
1621 tatgtattta catatgtgtg ttttcacact agctagctaa cagattatgt cttgtgcacc
1681 gtggtatatt gagagaagaa gagcctgctg cctgctgcat ccataaaata ccctaaattt
1741 ctgcttttgc ttttttaatt tttttatttg tacttgcata tattgttttt agttgtgatc
1801 acagagctag atataatttc cacttaagac gatattgtag tgtgtggttt taatctgttt
1861 tctatttgga tattcgatag gggggcgttt ttggttcaga tatcgaattt gctcattggc
1921 catagctagc tgtcatatat gacaaaatta gtacacctat tgacaggaca aagctagcta
1981 catgcatgtg tgcattttgc ttggaatcat gtaagatcac catccaattc gcaattgggc
2041 cacaaaatag ctatattagg gagccatttc acatcactaa aaacattttt ggtacttgaa
2101 tcaacagcta atcataattg gcccactgat tagctgtact catttgatca gctggctata
2161 atcatctcct tcaacagaca tgcatgtata tatgctatat agtactatac cttggaatgt
2221 acatattgaa ataaaataaa catggatcgg tgtgtagcgt atcatatatg catcgagaca
2281 catatttgtg acagtacatc ggaattttct aacatcatgc atgtttaatt actgcatata
2341 tgactttctg tcacttctat ttttcagaat actatctttg atcatctgct ggttagcctt
2401 gccattagtt catatataga cttatatata attttgtttt caatgttaat gcactaaaaa
2461 ttgtgctcca ttcgaacaaa atgcagagaa attaaaagat gattcagatt ggtccaaaat
2521 acatatatat agttagcatg gtcaagtaat ttaatgagtt tgccgatttg atatatcagt
2581 tttttatttc gtcaaataca cgatgatata tataggtgca tgaaataatt ctcagtattg
2641 ctaattgatc gttatttcag caggatgtga aattagttaa taattgccgc tatatatacc
2701 tgtcatatct tcgtattagg acttatccac atggacacat ccattttatg tcactgaaag
2761 ctcactatac ttcttaattt ttaatatgct tgcttataat ttatctatta gcgggagaag
2821 catcaatgat atacgatgga ataataaatt aatgcatgat attttatcca tcatgattaa
2881 aatacagtgc gatagcgccc atgaatatta cgatacacga gtatatatgc ttttaataag
2941 attttagtga agctagtgag ttacaatcgc tactatagct tcatctcttt gagcatatgt
3001 tagggaacat atttagagat gagtaagtgt ggtgtgccgc acgcgtaaga gtactttgtg
3061 aaatcggaaa aattaatctt tattaacaga ccgtgcgtgg gacatatttt aggccgtgtg
3121 agtattgtgg taatcgaaaa aaatattgtt aataaaccat gtgcacgaga tagatggatg
3181 tactagttaa tgggggtact agttatttta acaagtagtg ctgttgcata tcaaatatgc
3241 acatttaatt tctctcttat atatacagca tatatatgta tccgggataa atatgccgtg
3301 caaattaaat tgatttttgt gccatcagct atatattctt atgcacggaa tgcagatata
3361 tagaaaattc agtacatggc tttctttata ccgtggctaa cgtacgtata cgcatccata
3421 tgcatggatc cgtatatatg cctccaggga cttttgtatg tgtatcgcct cgtactctct
3481 gttgtttgaa tgtttttgta gatctagcga tcaatgtgtt taattaatta accgaacgct
3541 accaacagta ctacaccact tatacagcac ctgctgactt taatttaaag tatatatact
3601 ttttgagatt taaccaagtt atagttgatg aatgttacgt gctacacagc gcttgtgctt
3661 taattagatc gaccaaacct agctggctag ctagcgtatt actctaatta atatactcga
3721 tcggtatata tataagagct tagcatgcgt ggaacagtac ggtacaaatt aattttgtgt
3781 cattttgact cattgtgtgt gtgtaagtct gtatagaatt gttcattgtg tataattaag
3841 cttgtataca attaattaat tgtgcaatta tatatattgt gtgtaagatt ataacatggg
3901 aaagctgttc gtgtatgcac catgtatgcg tgtaagctaa cgaggatata ttgcggccga
3961 tggatacatg gcacctatcc ctaaaattca tttttttaat tagtcccttt tactgtcctt
4021 tcctgctgct taattgagcc catatatatt aatctactct ggcatcaata tagaagaaac
4081 gagaagaagt ctaaggccca ttccattatt tgtactgaga gctgcagaat ttgtaagaac
4141 tttggtatac gaaatattcc cactaatttg aatgttggtt ttcctacaaa attctcgata
4201 cactagagtg aagtgctcaa gacaacaaac atgaattgga gtgcgtgtag tggttagcta
4261 gctaattata attaatcttt gattaatgat atagatatag taaagggaaa catatatcct
4321 atgcacacaa actttccgtg cataccaact aataaatatc atgaaaaatt atagaaaaaa
4381 ttggatattt attcataata gtcgagatga tgcagtacat atatatccta tctgtttcta
4441 attaacatta acacgagatt tatggcgagg ggcagcagaa aattactcag aattaaataa
4501 caaccttttc tgtcttagca agtagtagca acgtcagact gacgtcgttg cataaatata
4561 tgtacagttg tctccaacta caaggacgta cagactgacg ctacggagat atgtcgaata
4621 cgtcataagt taggaccatg tccaaagcat gcatgacatt gttgttgttt tcctgaaata
4681 tttggaaatt atatattcag aagacttagc tatatatata cacgcatata tataataatt
4741 aattaaatag ctactagcta gtaggtgcga gtaccacgcg cgtacgtacg tacacctctc
4801 tagctagctg tattcctgta cgtatttagt gtatggtaca gggacatgat cagtacagat
4861 tatatattat tcatggtaac gtgtaacctt gtatgccata tggacgtatt atgcatataa
4921 tgtgactgat tcaattggtg caaatgcatg gctactaagc aagcttcccc tgctctagaa
4981 ttattgatta gttaacaaat tttgtcggtt caattccaac ctggtcatat cataagtaca
5041 ggttctgtta gttcttccct tgcatcttga cgaacactct caatttaatt tcttgaatct
5101 tgacgagtag tccgtcaaaa tcttaaatca tagctataga gactaccgtc ctggtaagaa
5161 ttcattaatt acatcgatga atgtctggca gtacttaatt taccagaaaa ctggtgaatt
5221 aatcagccat cgatgatcgt tgcctgttgc cacaatctgt tgattgattt tttttcccct
5281 acttccatcg tcaaaacgat caattattag tcttgcgcaa caccaagttg aactccgtac
5341 atcatcagac gatgctatgt tgtttaattt gcatatcgtc ggagctctga actcatgaac
5401 ttaagtacgt ggatacacta tcatcattct acctacaccg ccttctgtag aaaattatac
5461 gggagttttt ctaatttata tggaatttaa ctgtttaccg cagctgtaaa ttaaattcct
5521 aattcctgta caacagtaca agaagactga tcatatatcc aatatccatg attttttagt
5581 agatatagtc ggtccttcca tagttatgtg gtttaatttg tttactatga tctaactagt
5641 ttagatatcc tcaagttgtt ttccacttta tccacacttt caatcaaaac catgcgcgct
5701 taatgccttt ataaacatta taaacacggc gagaagagat tgaaatgtcc tgacgtcgca
5761 tagatcgaaa gctagttaat taattaagct aattaattag acgtccagct gaaagcctga
5821 aagctaaagc tcgaaatcat acacg
//