LOCUS AK288475 2813 bp mRNA linear PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090038A13, full insert
sequence.
ACCESSION AK288475
VERSION AK288475.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2813)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2007)
COMMENT This clone is one of the 1.9K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2813
/clone="J090038A13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="5 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
BASE COUNT 682 a 707 c 758 g 666 t
ORIGIN
1 tgctctctct gctcgcgcgg aagccatggc gtctcgcggc ggtggcggcg gcggcgacgg
61 caattcccct cctccctccg tgtcgtcgcc ggatgtgcga ccgtcgagcc ctctcccggc
121 gaccaactcc tccccgcctc agtcggggcg gcgcggcggg gggcggcgcc ggcgtggttc
181 cgccagcccg tacccgtcgt ccccgtccct cggcgggttc gagacgccgc cgcacccggg
241 ccgccgcacg ccctccggcg gcgcggcggc gcggcagcag cggcagaact ggacgggggg
301 gcggttcccg ccgaccccgt ccacccccat gtccaccgac gacgtcccgc tctcctcgga
361 ggccggggac gaggacaccc ccgagaccga cggcggcggc ggcggcggcg cgggcgccga
421 cgccacgccg gtgttcgtct ggggcaccaa catcagcgtg caggacgtca acgccgccat
481 cctccggttc ctccgccact tccgcgaccc gcgcgacgcc ggccgcgtcg acccggtcat
541 ggacgagggc aagtacatgc gcgccatcca ccgcatcctc gagctcgagg gcggggagtc
601 gctcgacgtc aacgcccacg acgtgttcga ccacgacccg gacctctacg gcaagatggt
661 caggtacccg ctcgaggtgc tcgccatctt tgacatcgtg ctcatggacc tcgtcgcgcg
721 catcgagccc ctcttcgaga agcacatcca gaccaggatc tacaacctca agtcctcggt
781 ttgcttgagg aatctcaacc cttctgatat cgagaagatg gtgtccatca agggtatgat
841 aattcggtgc agctcggtga ttccagagct caaggaggct gtgttccgct gcttggtttg
901 cgggttctac tctgagcctg taatggttga tcgagggagg gttactgagc cgcacatctg
961 tcagaaagaa caatgtaaag ctacaaagct ctatgactct tgtgcataac cgatgcaggt
1021 ttgcagataa gcagatcata aagttgcagg aaacaccaga tgagatacca gaaggtggca
1081 ctccacatac tgttagtgtc ttgatgcacg ataagcttgt agatgctgga aagcctggag
1141 acagggttga gataactggg atatacagag ccatgagtat tagagttggc ccaactcaga
1201 ggacagtgaa gtcgattttc aagacgtaca ttgattgcct tcacataaag aagacagaca
1261 agtctagact tcatgttgag gactccatgg aaactgataa ccccaatgct aacaagacaa
1321 ctgaagatga ttttctcaga gataaggttg agaaattaaa agagttgtca aagttgccag
1381 atatatatga cagattaact aggtcattgg ctccaaacat atgggagctg gacgacgtta
1441 aaaggggcct cctttgccag ctttttggtg gaaatgcttt gaggcttcct tctggagcta
1501 gtttccgagg cgacatcaat attttgcttg ttggtgatcc tggaacaagt aaatcccagc
1561 ttctccaata catgcacaaa ctgtctcctc gtggcattta tacaagtggc agaggaagtt
1621 cagctgttgg ccttactgca tacgttacca aggatcctga aactggtgaa actgttcttg
1681 agagtggagc gcttgttttg agtgacaaag gtgtttgttg tattgatgaa tttgataaga
1741 tgtctgataa tgctcgaagc atgttacatg aggtgatgga acaacagact gtctccattg
1801 ccaaggctgg aataattgca tctttaaatg ccagaacatc agttctagca tgtgcaaatc
1861 ctactgaatc acgttataat ccaaggctct ctgtgattga caatatccat cttcctccaa
1921 cactgctttc taggtttgac ctcatttatc tgatattgga caaggcagat gagcaaactg
1981 atagacgcct ggctaagcat attgtttcgt tgcattttga gaatccaaac atagaggagc
2041 tcgaggtctt ggatttgcca acacttgtag cctacataag ttatgcaagg aagcatatac
2101 aaccacagtt atctgatgaa gctgcagaag aattgactcg cggctatgtt gagatgagga
2161 aaagaggaaa cagccctggt agcagaaaga aggtcataac tgcgacagct cgacaaattg
2221 agagcttgat tcggctcagt gaagcactgg cccgaatgcg attctctgaa atggttgaag
2281 tacaagatgt tgtagaggcc ttcaggcttc tcgaagttgc catgcagcaa tcggcaactg
2341 atcatgccac tggtacaatc gatatggatc ttatcatgac tggaatatct gcgagcgaaa
2401 ggcagaggcg ggacaatctc gttgcagcaa cccgcaacct tgtgatggag aaaatgcagc
2461 ttggagggcc ctcagtgcga atgattgagt tgctggaaga aattaggaag cagagctcta
2521 tggaagttca tctgcatgat cttcgcggtg ctcttggcac tctgatgaca gagggtgccg
2581 tagtcatcca tggagacagc gtcaagaggg tctgatgcct tattatttgc gatctctcta
2641 gctaatgttc tgatccgttg ttagtgctct caattggaga ctgcttacac atcggactta
2701 ttgtctaact gtataatttt tagataatgt ttcttgttac ggttgcttac atgaaaacaa
2761 gcaagtgtta atcagagttg taatgtaatg catcagtttc cttttagtca acc
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