LOCUS AK243618 1698 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100085O15, full insert
sequence.
ACCESSION AK243618
VERSION AK243618.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1698)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1698
/clone="J100085O15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="0.1M NaCl for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 102..1445
/db_xref="Osa1:LOC_Os03g01530"
/note="(Rice Genome Annotation Project) tubulin beta-2
chain, putative, expressed"
/note="mapping to R03-TIGRv4S1-000027F (Chr.3: short
arm=318330, long arm=320102, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAH01676.1"
/translation="MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQL
ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWA
KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP
DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT
TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR
GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQ
NKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK
AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEDEEEEADLQD"
BASE COUNT 342 a 592 c 431 g 333 t
ORIGIN
1 aacactccac taacgcctcc cgacgccgcc gccgcctcct cctcttgttt cgccaccgcc
61 gccgccgcct acgaggaaga agaaagaaga ggaaggagaa gatgagggag atcctccaca
121 tccagggtgg gcaatgcggg aaccagatcg gcgccaagtt ctgggaggtg gtgtgcgcgg
181 agcacgggat cgacgccacc gggcgctacg acggcgactc cgacctgcag ctggagcgcg
241 tcaacgtgta ctacaatgag gcctcctgcg ggcgcttcgt cccgcgcgcc gtgctcatgg
301 acctggagcc gggcaccatg gactccgtcc gctccggccc ctacggccac atcttccgcc
361 cggacaactt cgtcttcggc cagtccggcg ccggcaacaa ctgggccaag ggacactaca
421 ccgagggcgc cgagctcatc gacgccgtcc tcgacgtcgt acgaaaggag gccgagaact
481 gcgactgcct ccaagggttc caggtttgcc actcgcttgg cggcggcacg gggtccggca
541 tgggcacgct cctcatctcc aagatccggg aggagtaccc cgaccggatg atgctcacct
601 tctccgtctt cccctcgccc aaggtctccg acaccgtggt ggagccctac aacgccaccc
661 tctccgtcca ccagctcgtc gagaacgccg acgagtgcat ggtgctcgac aacgaggccc
721 tctacgacat ctgcttccgc accctcaagc tcaccacccc aagcttcggc gacctcaacc
781 acctcatctc cgccaccatg agcggcgtca cctgctgcct ccgcttcccc ggccagctca
841 actccgacct ccgcaagctc gccgtcaacc tcatcccctt ccctcgcctc cacttcttca
901 tggtcggctt cgccccgctc acctcccgcg gctcgcagca gtaccgcgcc ctcaccgtcc
961 cggagctcac ccagcagatg tgggacgcca agaacatgat gtgcgccgcc gacccccgcc
1021 acggccgcta cctcaccgcc tccgccatgt tccgcggcaa gatgtccacc aaggaggtgg
1081 acgagcagat gctcaacgtc cagaacaaga actcctccta cttcgtcgag tggatcccca
1141 acaatgtcaa gtccaccgtc tgcgacatcc cccccaccgg cctcaagatg gcctccacct
1201 tcatcggcaa ctccacctcc atccaggaga tgttccgccg cgtcagcgag cagttcaccg
1261 ccatgttccg caggaaggcc ttcttgcact ggtacacggg cgagggcatg gacgagatgg
1321 agttcaccga ggctgagagc aacatgaacg acctcgtctc cgagtaccag cagtaccagg
1381 acgccaccgc cgacgacgag ggtgaatacg aggatgagga agaagaggct gatctccagg
1441 actaattact actctactgc aatatcaatg tccaatctaa tggggttcgg ttcacttctt
1501 gtgttgctta ggctatcttc tcaagtgttg tcgttcttaa ttattactcc tagctgctac
1561 tctactctac ttgatgtatt attattactc agctttgatt gatgataggc acaataccct
1621 gttgccttgt actcgtagga gtatgtgctg ttactgtcta actgatctgt atgaattatc
1681 atcctatttt tgttaaag
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