LOCUS AK243545 1652 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100079C15, full insert sequence. ACCESSION AK243545 VERSION AK243545.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1652) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1652 /clone="J100079C15" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="gamma-irradiated (4min), after 10hr" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" misc_feature 1..1652 /db_xref="Osa1:LOC_Os09g36020" /note="(Rice Genome Annotation Project) vacuolar sorting protein SNF8, putative, expressed" /note="mapping to R09-TIGRv4S1-000694R (Chr.9: short arm=20744356, long arm=20748028, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 329 a 498 c 451 g 374 t ORIGIN 1 ggtgacccaa acatcatcgc ctctcgccgt cgtctcgtct cttcctctgc ggctgaacta 61 gtcgccgatc cagaggccgt cgtccactcg cggtcccacc ggccaccgcc tccgccgcct 121 ctcaccggcg ccaccgctgc tctgcctcca ccgcgttcct cctctccaca agcctcggtc 181 gcccagtacg catcccatcc gtcgccgtcg acctagctgc ctggtggagg tggaggcgag 241 ggggattgac tcggctccgg cgctccgatt gagcccgcag ccgaccgatc cggatacgat 301 ccgctccgct cctcgccgga gcggaggctg tcgcgaaccc aggtaacatc cccgccctaa 361 cctcccacgc cgcacgcacg cgaaggccga cggcggcagc gccatcccct gacggccgac 421 tgcgcagcgg cgctccgccc cgcgccccgg cctgggcctg cccgccttcg gccttccccg 481 actcgcgccg ctgctgcgcc ccgccgtgca gccgttgcct tcgcccttcg cgtcggcgct 541 gccgtgtcgt cgctccgtgc agcgccgtcg cgcgcggcgc gcccgctgcc cggcatccgg 601 ccctccccca agccccagcc cccttggact ccgccaattt agactaggaa gcatgaggag 661 gcgaccggga atcgcgggct tgcagaacgc agcggctact cgtgaccaat tccggctggt 721 tggggaaaat gtggccaagg tcaggaccga tgtcatgaag gagcagcttg cgacgtttcg 781 gacacagctc gaagaatttg cacgcaagca taagaatgat atccgtaaaa atccactatt 841 tagacaacag ttccatgaga tgtgtgcaaa agttggagta gacccgctgg cttcgaataa 901 aggagcttgg gcagagcttc tagggattgg tgacttctac tatgaattgg gagttcagat 961 tgttgacata tgcatagcaa ccagagcgac caacggtggc ttgattgact tgctagatct 1021 ccgtaaactc ctctgtcaga agaggaaagc tgatcttgga tcgttaacat cagatgattg 1081 tttgcgtgcg ataagtaagc tgaaggtcct tggtagtggt tttgaagtaa tttctgttgg 1141 gaagaaaaag cttgtgcgtt ctgttcctac agaactgaat aaagatcaca atgggatact 1201 tgagctagct caggctgaag gttttgtcac cgtagagcaa gtcgagagaa agttctcgtg 1261 gtcaactggc cgtgccattg acgtccttga aactttgctc aaggaagggc ttgcgatgat 1321 cgacgatggg cacagggatg gcaagcgcag atactggttc ccgtgcgtca ctctcagctc 1381 tgactctact ggtgcggatg ccaagtcatg acctgtgccg tgcctgttcc actccgttgt 1441 tgtcacctgt atccttttcc attggttcat ttctgtaggc actgaagcac atatggcatg 1501 ccatttacca gtacagctct ggaagaatca tgagatagca atacactttt cagggctggg 1561 ctgccggcaa aatttttaca ttgtgattcg tgcatcagga ttctggatgt atttgtacta 1621 gtgatctata ctatactagc tcttctttca cg //