LOCUS       AK243545                1652 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA, clone: J100079C15, full insert
            sequence.
ACCESSION   AK243545
VERSION     AK243545.1
KEYWORDS    FLI_CDNA; CAP trapper.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
            Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
            Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
            Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
            Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
            Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
            Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
            Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
            Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
            Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
            Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
            Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
            Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
            Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
            Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
            Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
            Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
            Bito,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Division of Genome
            and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
            305-8602, Japan
REFERENCE   2
  AUTHORS   Kikuchi,S.
  TITLE     Oryza sativa full length cDNA
  JOURNAL   Published Only in Database(2006)
COMMENT     This clone is one of the 2.6K full-length cDNA clones from
            japonica rice.
            URL:http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
            Yamamoto,M. and Nakahama,Y.
            
            NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
            Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1652
                     /clone="J100079C15"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /note="gamma-irradiated (4min), after 10hr"
                     /organism="Oryza sativa Japonica Group"
                     /tissue_type="root of seedling"
     misc_feature    1..1652
                     /db_xref="Osa1:LOC_Os09g36020"
                     /note="(Rice Genome Annotation Project) vacuolar sorting
                     protein SNF8, putative, expressed"
                     /note="mapping to R09-TIGRv4S1-000694R (Chr.9: short
                     arm=20744356, long arm=20748028, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          329 a          498 c          451 g          374 t
ORIGIN      
        1 ggtgacccaa acatcatcgc ctctcgccgt cgtctcgtct cttcctctgc ggctgaacta
       61 gtcgccgatc cagaggccgt cgtccactcg cggtcccacc ggccaccgcc tccgccgcct
      121 ctcaccggcg ccaccgctgc tctgcctcca ccgcgttcct cctctccaca agcctcggtc
      181 gcccagtacg catcccatcc gtcgccgtcg acctagctgc ctggtggagg tggaggcgag
      241 ggggattgac tcggctccgg cgctccgatt gagcccgcag ccgaccgatc cggatacgat
      301 ccgctccgct cctcgccgga gcggaggctg tcgcgaaccc aggtaacatc cccgccctaa
      361 cctcccacgc cgcacgcacg cgaaggccga cggcggcagc gccatcccct gacggccgac
      421 tgcgcagcgg cgctccgccc cgcgccccgg cctgggcctg cccgccttcg gccttccccg
      481 actcgcgccg ctgctgcgcc ccgccgtgca gccgttgcct tcgcccttcg cgtcggcgct
      541 gccgtgtcgt cgctccgtgc agcgccgtcg cgcgcggcgc gcccgctgcc cggcatccgg
      601 ccctccccca agccccagcc cccttggact ccgccaattt agactaggaa gcatgaggag
      661 gcgaccggga atcgcgggct tgcagaacgc agcggctact cgtgaccaat tccggctggt
      721 tggggaaaat gtggccaagg tcaggaccga tgtcatgaag gagcagcttg cgacgtttcg
      781 gacacagctc gaagaatttg cacgcaagca taagaatgat atccgtaaaa atccactatt
      841 tagacaacag ttccatgaga tgtgtgcaaa agttggagta gacccgctgg cttcgaataa
      901 aggagcttgg gcagagcttc tagggattgg tgacttctac tatgaattgg gagttcagat
      961 tgttgacata tgcatagcaa ccagagcgac caacggtggc ttgattgact tgctagatct
     1021 ccgtaaactc ctctgtcaga agaggaaagc tgatcttgga tcgttaacat cagatgattg
     1081 tttgcgtgcg ataagtaagc tgaaggtcct tggtagtggt tttgaagtaa tttctgttgg
     1141 gaagaaaaag cttgtgcgtt ctgttcctac agaactgaat aaagatcaca atgggatact
     1201 tgagctagct caggctgaag gttttgtcac cgtagagcaa gtcgagagaa agttctcgtg
     1261 gtcaactggc cgtgccattg acgtccttga aactttgctc aaggaagggc ttgcgatgat
     1321 cgacgatggg cacagggatg gcaagcgcag atactggttc ccgtgcgtca ctctcagctc
     1381 tgactctact ggtgcggatg ccaagtcatg acctgtgccg tgcctgttcc actccgttgt
     1441 tgtcacctgt atccttttcc attggttcat ttctgtaggc actgaagcac atatggcatg
     1501 ccatttacca gtacagctct ggaagaatca tgagatagca atacactttt cagggctggg
     1561 ctgccggcaa aatttttaca ttgtgattcg tgcatcagga ttctggatgt atttgtacta
     1621 gtgatctata ctatactagc tcttctttca cg
//