LOCUS AK243517 2386 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100075F14, full insert
sequence.
ACCESSION AK243517
VERSION AK243517.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2386)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2386
/clone="J100075F14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="2ppm BAP(benzyl amino purine)"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
misc_feature 1..2386
/db_xref="Osa1:LOC_Os01g58260"
/note="(Rice Genome Annotation Project) peptidase/
subtilase, putative, expressed"
/note="mapping to R01-TIGRv4S1-001512F (Chr.1: short
arm=33994864, long arm=33999264, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 622 a 623 c 628 g 513 t
ORIGIN
1 gacctaaaga aaataaaaat ggaagtccat tcttgtcagc accgtttggt ttcattgctg
61 ctactttgtt tttggatgct gttcatcaga gcgcatggat cacgcaagct gtacatagcg
121 tatctcggtg acagaaagca tgcacgccca gacgacgttg ttgcttctca ccatgatacg
181 ctctcgagtg ttcttggaag taaagacgaa tccttatctt ccatcatcta taactacaag
241 catgggttct caggctttgc tgccatgctg acagctgagc aggcagaaca gcttgcagag
301 ttaccagaag tcatcagcgt tcagcgaagc aggaggtaca ggacggcgac cacacggagc
361 tgggacttcc tggggctgga ttaccaaaag cccagtgaat tactcagaag gagcaaccac
421 ggacaagaga taatcatcgg gattattgac accgggatat ggccggagtc aagaagtttc
481 agcgacgaag gatacgggcc ggtgccggca cggtggaagg gcgtgtgcca ggtcggagaa
541 ggatggggca gcaacaactg cagccgcaag atcatcggcg cgcggttcta ccacgccggg
601 gtggacgagg acgacctcaa gatcgactac ctctcgcccc gcgacgcgaa cggccacggc
661 acgcacacgg cgtccaccgc ggcgggctcc gtcgtggagg cggtcagctt ccacgggctg
721 gccgcgggca ccgcccgcgg cggcgcgccc cgggcgcgca tcgcggtgta caagtccgtc
781 tggggcaggg gcggcgccgg gtcagggaac tccgccaccg tgctcgccgc catcgacgac
841 gccatgcacg acggcgtgga cgtgctatcc ctgtccctcg aggttcagga gaactcgttc
901 ggcgcgctgc acgccgtcca gaaggggatc accgtcgtgt acgccgcagg gaactctgga
961 cctgtgccgc aggtggttgg gaacacggct ccatgggtca tcacagtcgc agcaagcaag
1021 atcgatcggt ctttcccgac cgtgatcact ctgggggaca agactcagat agtgggacag
1081 tccatgtaca gcgaagggaa gaactcatca ggaagcacct tcaaacttct agtagatgga
1141 ggcctatgca ccgataatga tctgaacggc acggacataa agggaagagt tgtgctgtgc
1201 acctccctcg ggataccacc gcttatgctt ttcccggtag cattgaaaac gtcttggatg
1261 ctgggggttc aggtctatct tcgctcatac acactgacat ctggacgtca caaaaaactg
1321 caacggcact gcctgtgttc tgtgggacct tgacactgca caactgatca gctcatacat
1381 cagcggcaca agctcaccag tggcaaagat cgaaccacca cgcactgtca cgggtgaagg
1441 gatactggca ccaaaagtgg cagcattctc ctcgagaggt ccatcagttg attaccctga
1501 tattattaag cctgatgtag ctgcaccagg atccaacatt ttagcagccg tgaaagacgg
1561 atacaaactt gagtcaggaa catcaatggc aacgccacat gttgcaggca ttgttgcgct
1621 gctgaaagct ctccatccag actggtctcc agctgcaata aaatcggcag ttgttactac
1681 tgcgtctgta actgatgaac gaggcatgcc aatactggca gaaggagtgc ctcggaagat
1741 cgctgatccg tttgactacg gaagtggaaa cattaaccca aacagggcag ctgatcctgg
1801 cctcatttat gacatcgacc caacagatta caacaagttc tttgcgtgca ccatcaagac
1861 atctgccagc tgcaatgcaa caatgctacc taggtatcac ctgaacctac catcaatcgc
1921 tgttcctgat ctcagggatc caacaactgt atctagaaca gttagaaatg taggtgaggt
1981 taatgcagtt taccacgctg aaatccagtg cccacctgga gttaaaatgg ttgttgagcc
2041 atctgttctt gtcttcgatg ctgcaaacaa agttcacacc ttcaaggtta gtttttcacc
2101 tctatggaaa ttgcaagggg actatacatt tggcagcctt acttggcaca atgacaacaa
2161 gtcagtgaga attccaatag cagtccagat caccatccaa gatttctatg cagatgttgc
2221 ataacctggg caaaacatgc aggcaataac acagtgctct tagaggcaat agagcaaaat
2281 acaggatata ccaatttcca cagagatatg gttgcttgta aatacttatc accagaataa
2341 tgagttaatg accggccaat gttgactggt caatgtattt catttc
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