LOCUS AK243429 1240 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert
sequence.
ACCESSION AK243429
VERSION AK243429.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1240)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1240
/clone="J100067L16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="gamma-irradiated, after 24hr"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 191..970
/db_xref="Osa1:LOC_Os02g07450"
/note="(Rice Genome Annotation Project) nuclear
transcription factor Y subunit C-2, putative, expressed"
/note="mapping to R02-TIGRv4S1-000228R (Chr.2: short
arm=3846219, long arm=3850110, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01594.1"
/translation="MEPSSQPQPVMGVATGGSQAYPPPAAAYPPQAMVPGAPAVVPPG
SQPSAPFPTNPAQLSAQHQLVYQQAQQFHQQLQQQQQQQLREFWANQMEEIEQTTDFK
NHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQ
KNDIAAAITRTDIYDFLVDIVPRDEMKEEGLGLPRVGLPPNVGGAADTYPYYYVPAQQ
GPGSGMMYGGQQGHPVTYVWQQPQEQQEEAPEEQHSLPESS"
BASE COUNT 308 a 330 c 328 g 274 t
ORIGIN
1 gagggcgacc gcgtctccct ctctctctct ctctccgccg ccgacgccga gggctccacg
61 agagggaggt gggcggcgcg gcccttcgcc ggagggagcg ctctccgccg ccgccgctcc
121 cgctcccgcc ggcgcgggag atccgggcgt cgtctctcgg gcctttggct ttggacggac
181 aagagctgac atggaaccat cctcacagcc tcagcctgtg atgggtgttg ccactggtgg
241 gtcacaagca tatcctcctc ctgctgctgc atatccacct caagccatgg ttcctggagc
301 tcctgctgtt gttcctcctg gctcacagcc atcagcacca ttccccacta atccagctca
361 actcagtgct cagcaccagc tagtctacca acaagcccag caatttcatc agcagctgca
421 gcaacagcaa cagcagcaac tccgtgagtt ctgggctaac caaatggaag agattgagca
481 aacaaccgac ttcaagaacc acagcttgcc actcgcaagg ataaagaaga taatgaaggc
541 tgatgaggat gtccggatga tctcggcaga agcccccgtt gtcttcgcaa aggcatgcga
601 ggtattcata ttagagttaa cattgaggtc gtggatgcac acggaggaga acaagcgccg
661 gaccttgcag aagaatgaca ttgcagctgc catcaccagg actgatatct atgacttctt
721 ggtggacata gttcccaggg atgaaatgaa agaagaaggg cttgggcttc cgagggttgg
781 cctaccgcct aatgtggggg gcgcagcaga cacatatcca tattactacg tgccagcgca
841 gcaggggcct ggatcaggaa tgatgtacgg tggacagcaa ggtcacccgg tgacgtatgt
901 gtggcagcag cctcaagagc aacaggaaga ggcccctgaa gagcagcact ctctgccaga
961 aagtagctaa agatgataca gtgaagttgt gacattgata tacattgtcc tgtgaactta
1021 gggcctctaa aactcagtgc tcttgtcaaa actattccca tgattgttgg ctgaaacggg
1081 taatctgatt aggtcttagg ctttcctaat gttagttctg ctctgctatg gcagcagtag
1141 aaaaaaaaaa agattgtgat ttggtaggtg atttgcaact aatgtagtaa ctgtacctta
1201 cctttcatca gtttctaatc caatactcaa aagtgctggc
//