LOCUS AK243352 1432 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert
sequence.
ACCESSION AK243352
VERSION AK243352.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1432)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1432
/clone="J100060L07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="10mM H2O2 (10min), 24hr after treatment"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 147..1088
/db_xref="Osa1:LOC_Os02g08544"
/note="(Rice Genome Annotation Project) homeobox protein
knotted-1-like 3, putative, expressed"
/note="mapping to R02-TIGRv4S1-000292F (Chr.2: short
arm=4625421, long arm=4628747, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAH01555.1"
/translation="MAFHYPDHGLAMDPSSAAASSPNPSFSPGGGGGGGVGGGEREKA
AVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGE
ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATM
SDDEDNQVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKL
VDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINN
WFINQRKRNWHSNPASSGEKTKKKRNVTGDGGAEQSW"
BASE COUNT 344 a 377 c 406 g 305 t
ORIGIN
1 gattgtcatc cgctcttctt cccctcttcc ccactcgcac caaccccaac ccccccaacc
61 gccgccgccg ccgccgacga cccaccggtc gccgcgtcgc cggagtcgcg tactggagag
121 gggggcggag aggcaccagc cgccccatgg cgttccacta cccggaccac ggcctcgcca
181 tggacccgtc ctccgccgcg gcgtcgtcgc ccaaccctag cttctccccc ggaggcgggg
241 gcgggggcgg ggtcggggga ggggagaggg agaaggcggc cgtcgcggcg cacccgctct
301 acgagcgcct gctcgaggcg cacgtcgcct gcctccgcgt cgccaccccc gtggaccagc
361 tcccccgcat cgacgcgcag atcgccgcgc gcccgcctcc cctcgcagcc gcctccgccg
421 ccgccgccgc cggtggcccc tccggtggcg aggagctcga cctcttcatg acacattatg
481 tgttgcttct ttgctcattc aaggaacaac ttcagcagca tgtgcgtgtt catgcaatgg
541 aagcagtgat ggggtgctgg gaacttgaac agtctttaca aagtctaaca ggggcatctc
601 ctggtgaagg gactggagcg actatgtctg atgatgaaga taaccaagtg gacagtgaag
661 ccaacatgtt tgatggaaat gatgggtcag acggcatggg ctttggtccc ttaatgctga
721 ccgagggtga aagatccttg gttgagcgtg tacggcatga gctgaagaac gagcttaagc
781 aggggtacaa agaaaagctt gtggatatta gggaagagat ccttcgcaag cggagagctg
841 gtaaacttcc tggtgatact gcatctatac taaaagcttg gtggcaagct cattctaagt
901 ggccataccc aactgaagac gacaaggccc gcctggtgca ggaaacgggg ttacaactga
961 agcaaatcaa caattggttc attaaccaac gcaaacgaaa ctggcatagc aacccagcat
1021 cctctggtga aaagaccaag aagaaaagaa acgttacagg tgatggtggt gctgagcaat
1081 cgtggtagat tggttcaaca tgaaactaga tgtaaacagt accttttatt gtgaagagtg
1141 tagtacattc tctcgtgctc tggtgtgaca aaatctggag accggcccat tcacaaggga
1201 attgcgatca taggcgtaat cactgggcaa agaagtcatc tgaaattgta gcataagcgc
1261 acaaaactga ggtgggtggt atttgacttt cgcagtatag catcgactgt ctgctaatgt
1321 gattttgtga aggaatgttc tgtataaccg atgaacggaa ggaagaattg tattgtgtat
1381 gtaattgtgt atcttattta tcatgtaata tatatatgat attaggagct tt
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