LOCUS AK243334 1204 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence. ACCESSION AK243334 VERSION AK243334.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1204) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1204 /clone="J100058P16" /cultivar="Nipponbare" /db_xref="taxon:39947" /dev_stage="2 weeks seedlings" /mol_type="mRNA" /note="UVC irradiated (0.7min), 48hr after treatment" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" misc_feature 1..1204 /note="mapping to R06-TIGRv4S1-001126R (Chr.6: short arm=29365038, long arm=29369368, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 286 a 285 c 367 g 266 t ORIGIN 1 ggatgcggcg gcgcacgtcg cgcccacggt cgaccacctc gccgcggtgg ccgccgaggc 61 cgaggcgatg gcccgcttcg aggaggagca ccgcgccctg ggggcggagg aggagtatga 121 ggaggaggag gatgagttgg aggaggagga ggaggagatg gaggaggatg aggacgcgca 181 acatcatgag ggggtgggcg gcgaggtggc tgtcccgatg gacgcggagg ccgccgcgca 241 gctggacccg cacggcggga tgctcgccgc ctccggcgct gtccagccca tggcgtccaa 301 ccaactcacc ctctcgttcc agggcgaggt ctacgtcttc gactctgtct cccctgacaa 361 ggttcaagca gtgctcttgc tactcggtgg aagggagctg aacccaggtt tgggctctgg 421 agcatcgtca tctgcgccat acagtaagag gttgaatttt ccacaccggg tggcatcttt 481 gatgcggttc agagaaaagc ggaaggagcg caactttgat aagaagatcc ggtattctgt 541 tcggaaggaa gttgcactta ggatgcagcg caatagaggt cagtttacat cttcaaaacc 601 aaagggtgat gaagcaacat cggaattgac agcttcagat ggctccccaa actggggatc 661 agtggaaggt cggcctccct ctgctgctga atgccatcac tgtggtataa atgcaaaggc 721 tacacctatg atgcgtcgtg gacctgatgg gccaagaaca ttatgcaatg cctgtggcct 781 catgtgggca aacaagggga tgttgaggga cctatcaaaa gcacctccca cacctattca 841 agttgtggca tcagttaatg atggtaatgg aagtgctgca gcacctacca ccgagcaaga 901 aattcctgca ccagccactg tcaatggcca cgaatcatca acgtgagtat agcgatgttt 961 gtcttgtgga ggatcgcgaa catcatgccg gcattatatc catgtagttt aactgtctgt 1021 actataactt gatgagaacc tgttaggtac ctaggccatt tctttaccat catttagggt 1081 ttgaatgttg ttctgcatat gttgtaagcc atgaaaaatc atgcttccgg tcattatggc 1141 cgtagcaatt ttatttcttg ttagactctt gggtggaagt gagaacagag aaggtgatga 1201 agcg //