LOCUS AK243286 1908 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100052F22, full insert
sequence.
ACCESSION AK243286
VERSION AK243286.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1908)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1908
/clone="J100052F22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="6ppm CdCl2 for 3 days"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
CDS 710..1690
/db_xref="Osa1:LOC_Os11g38050"
/db_xref="Osa1:LOC_Os11g38060"
/note="(Rice Genome Annotation Project) hydrolase, acting
on ester bonds, putative, expressed"
/note="mapping to R11-TIGRv4S1-000671R (Chr.11: short
arm=22068656, long arm=22075440, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01521.1"
/translation="MRQLKYVGNFHPYDTAFKRDCKAGKLPNYVVIEQRYFDLKLLPG
NDDHPSHDVAHGQRLVKDVYEALRSSPQWHEILFVITYDEHGGFFDHVPTPVAGVPSP
DGIVSAAPVSFAFDRLGVRVPTLLVSPWIEPGTVVHDPASCGGAPEPTSQFEHSSIPA
TVKRIFGLKEFLTRRDAWAGTFDTVLTRAAPREDCPATLPEPPRLRAAEAEEHREVSE
FQAELVQLGAALNGDHDGEGYDPEVFVRGMTVAGAAQYCRDAFDRFREECHRCRDGGM
DGSHVPMLQPASASASSSAPAADPPATAPAPATPSALSKLCGCFPCFNAS"
BASE COUNT 325 a 635 c 601 g 347 t
ORIGIN
1 ggccactgag ctctagctaa taagccatcc tcgatcgttt atcttcctct tccctcttcc
61 aatcccagcc tcgacgccag ccatggcggg caagatcaag acggtggtgg tgctggtcca
121 ggagaaccgc tccttcgacc acatgctggg gtggatgaag tcgttgaacc cggagatcga
181 cggcgtgacg ggcgccgagt tcaaccgcgc caccgccggc gacccctcct ccccggcgat
241 ccacttcggc gacggctccg ggtacgtgga ccccgacccg ggccactcgt tccaggccat
301 ctacgagcag gtgtacggcg acgcctacac gtgggggacc acctcgccgg cgacgaagcc
361 gggggtgccc tcgccgccga tgagcgggtt cgcgcaggag gcggagaagg agcgcgccgg
421 catgtcgagc acggtgatga acgggttccg gccggagaag gtgccggtgt accgggagct
481 ggtgcgggag ttcgccgtgt gcgaccggtg gttcgcgtcg gtgccgacgt cgacgcagcc
541 gaaccggatg ttcgtccact cggcgacgtc gcacggcctc gtcagcaacg acggcaagca
601 gctccgcgcc ggcctgccgc agcgcaccat cttcgacgcc ctccacgacg ccggccactc
661 cttcggcgtc tactaccagt tccctccctc cgtgctcttc tacaggaaca tgaggcaact
721 caagtacgtg ggcaacttcc acccctacga caccgccttc aagcgcgact gcaaggccgg
781 caagctccca aactacgtcg tcatcgagca gcgctacttc gacctcaagc tcctcccggg
841 caacgacgac cacccttccc acgacgtcgc ccatggccag cgcctcgtca aggacgtcta
901 cgaggcgctc cgctcgagcc cccagtggca cgagatcctc ttcgtcatca cctacgacga
961 gcacggcggc ttcttcgacc acgtccccac cccggtcgcc ggcgtccctt cccccgacgg
1021 catcgtcagc gccgcccccg tgtcgttcgc cttcgaccgc ctcggcgtcc gcgtcccgac
1081 gctgctcgtc tcgccgtgga tcgagccggg caccgtggtg cacgacccgg cgtcgtgcgg
1141 cggcgcgccg gagccgacgt cgcagttcga gcactcgtcg atcccggcga cggtgaagag
1201 gatatttggg ttgaaggagt tcctgacgag gcgcgacgcg tgggcgggca cgttcgacac
1261 ggtgctgacg cgggcggcgc cgagggagga ctgccccgcc acgctgccgg agccgccgcg
1321 gctgcgggcg gcggaggcgg aggagcaccg ggaggtgtcg gagttccagg ccgagctggt
1381 gcagctcggc gccgcgctga acggcgacca cgacggggaa gggtacgacc ccgaggtgtt
1441 cgtccgcggg atgaccgtcg ccggcgccgc ccagtactgc cgcgacgcgt tcgaccggtt
1501 ccgggaggag tgccaccggt gccgcgacgg cggcatggac gggtcccacg tcccgatgct
1561 gcagccggct tcggcttctg cttcgtcttc cgctccggcg gctgacccgc cggccacggc
1621 gccggcaccg gcgacgccgt cggctctgtc caagctgtgc ggttgcttcc catgcttcaa
1681 tgcgtcgtag gatcgagagc atccatgaat tgcaaatgca actttgtaag tgtttgtttc
1741 atacttttca ttactccaga agatgattga ttaatgattg ctgttgattc attaaggaaa
1801 gattgggttt aattaaactt gtaattatga tcatgttgat gttgtttgta attgttacta
1861 tttgtttgag caataaaagt gactgctaat aaagtgtgaa aaaaaggc
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