LOCUS AK243265 565 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100049E07, full insert
sequence.
ACCESSION AK243265
VERSION AK243265.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 565)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..565
/clone="J100049E07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="2 weeks seedlings"
/mol_type="mRNA"
/note="UVC irradiated (0.7min), 48hr after treatment"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
misc_feature 1..565
/db_xref="Osa1:LOC_Os06g44450"
/note="(Rice Genome Annotation Project) CONSTANS-like
protein CO6, putative, expressed"
/note="mapping to R06-TIGRv4S1-000992R (Chr.6: short
arm=26842120, long arm=26842684, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 122 a 164 c 160 g 119 t
ORIGIN
1 gtcgacgtgg gcgtggtgcc ggagcgggcg gcggcgatgg gggaagggag ggaggcgagg
61 ctgatgaggt acagggagaa gcggaagaac cggcggttcg agaagacgat ccggtacgcg
121 tcgcgcaagg cctacgccga gacgcgcccc cggatcaagg gccgcttcgc caagcgcgcc
181 gaccacgacg ccgacgacgc cgacgccgac gccgacgacc ccgccgccgt cccatcctcc
241 tacatgctcg acttcggcta cggcgtcgtc ccgtccttct gatcgccgcc cgccgccggc
301 caccgccgcc gcgccgtcgc ttgtaatctt gtatcaaatc gatcgatcga tgtgtagggg
361 cgtagtaatc ccatgtagta ctcattttga gctagctcac gctagttttg tacactacta
421 ctgctactaa ttacgtgctt actacttagt ggtaattatt tttttgatca gcaagatcat
481 ctatattgta ttagctcccc ccaacgaata aatcacaact atatggtatt attcatcagc
541 taggaattgt tgatggaaac aaagc
//