LOCUS AK243178 2193 bp mRNA linear PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100036P15, full insert
sequence.
ACCESSION AK243178
VERSION AK243178.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2193)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2193
/clone="J100036P15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="2ppm NAA(naphthalene acetic acid)"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
BASE COUNT 558 a 510 c 556 g 569 t
ORIGIN
1 ggatgaactt ttttgggaga tgaggcgcct gtgcatatga cccataggca ggcgacaacg
61 cggcagcaga gcgctgcacg acctccgcct ccccaatccg tcccgtctcc tcgcccgccg
121 ccctcgactc ccgtctcctc gcctgccgct ggcgccgatc tccatcctgc tagcagaggt
181 ggcgccggcg tcctcctgct cccgccgcat tcgcatccta atccatccca tccggcctcg
241 gcctcgaatt tcgtctcctc gcccgccgct tgcgccgatc cccatcctgc gagcagaggt
301 ggcgcccggc gtcctccttc ttccaccgca tcgtcgctcg ccgctagtat attgaaggtt
361 gaagctttgt gggtatccag caagtatttc aatggcgttg ctacagtttg gaggtacctt
421 ggcccccaaa cttggggaaa aacctcagct gttgcccagg tcacctgcac ttacaagagt
481 tatttatgct gatccaagat ttctggtgtc gaaaagtggt agtggaggca ggcttaaaca
541 ccttgtatca cctactgcta gtttacaatc acggacatct tctcgactat ttaaccatgc
601 accatcaccg agatttcgcc atcgaaggag ttcaaggttc attgtcagag ctgatgctga
661 tttctattcc acacttggtg tttcaagaaa tgctagtaaa tctgaaatca agagtgccta
721 taggaagctt gctaggagct accatcctga tgtgaacaaa gatcctggtg ctgaacaaaa
781 gttcaaggat attagcaatg cttatgaggt tttgtctgat gatgagaagc gatcaatcta
841 tgataaatat ggagaagctg gtttgaaggg tgctggaatg ggaacaggag attactcaaa
901 cccattcgat ctctttgaat cattattcga aggctttggt ggaatggggg gaatgggagg
961 ccgtgctgct cggaacagac caatgcaggg tgatgatgag gcctacaatc tggtactcaa
1021 tttcaaggaa gcggtgtttg gtgtagagaa agaaattgag atcaccagac tggaaggctg
1081 taatacatgt gatggaactg gtgccaagcc tggaacgaaa ccaaccacat gcaaaacatg
1141 tggaggacag ggacaagtgg tctcctcaac aagaacgcca cttggaatat tccagcaggt
1201 ctccacctgc aatacttgcg gaggcactgg tgaattctct accccgtgca acacttgtgg
1261 gggtgatggc cgagtgcgga agacaaaaag gatcagtcta aaggttcctg ctggtgttga
1321 ttctggaagc agattgaggg tccggtctga ggggaatgct gggcggagag gaggccctcc
1381 tggagatctt tatgtgttta ttgatgttct ctctgatcct gttcttaagc gagatgggac
1441 aaacattcta tacacatgca aagtttcata tattgacgca attcttggga caaccgtcaa
1501 ggttcccact gttgatggga tggttgacct gaagatcccc tccggtaccc agccaggcac
1561 aacgttagtg atgtccaaga aaggtgtccc actcctcggg aagtcaaatg ctcgtggaga
1621 ccagctagtg cgtgtgcagg tcgagattcc aaagcgtctg agcagcgacg agaggaagct
1681 gattgaagaa cttgcaaacc taaacaaggc tcaaacagca aacagcagga gataattcca
1741 tgaggcttca ttggacaaaa tgctttggca atatgcaatt ttaacgcaaa ttgcagtgac
1801 taagtgagca tgaactggta aatcacttca caaactgtac gctcatgctg cgccgtacca
1861 tcggtgggaa ctgtgaattc tcatgtctgt aacttcattt ttaagccata gaaatctagt
1921 tccatccaaa acaccaaaac ggatggtgtt ttacagtagc ttgtcatatg cttttaggcg
1981 agcttattag tctatttttc ataatacttt ttcacaattt tgaaaggcct agggagaaat
2041 atttaatggt gcaaaaggga cgagttttga aacatttgtt tgtcgcagaa gcaccagacc
2101 attctgattg ttattgtaag ctgtaacatc aaagttttgg cagcaggttt tcatgtgctc
2161 ttaagcgttg ggggtttgtt ccgtttggtt ttc
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