LOCUS AK243162 3378 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100034K17, full insert
sequence.
ACCESSION AK243162
VERSION AK243162.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3378)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3378
/clone="J100034K17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="2 weeks seedlings"
/mol_type="mRNA"
/note="UVB irradiated (2.4min), 24hr after treatment"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
misc_feature 1..3378
/db_xref="Osa1:LOC_Os02g44610"
/note="(Rice Genome Annotation Project) protein kinase,
putative, expressed"
/note="mapping to R02-TIGRv4S1-001116F (Chr.2: short
arm=27023216, long arm=27028896, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 1071 a 745 c 832 g 730 t
ORIGIN
1 ggtaacttga tctcgaaatt tccattcatg aaacggctgg gcagttactc tgcagctgca
61 tggtcttgtg cttctcattt ctcaacgtca ggaagcagca atggatagcg acggcgaaga
121 gtacgacgcg atgtggagcg ctcggtgcag cgtcagctcg tcggccggct ctctgcagga
181 cgccggcgac cagtgggacg agcagagcct ggccgccggc gaggacaagg tgttcgtggc
241 cgtcgacgag gacgtcgagc acggcaagag cacattcctt tgggcgctgc agaacctgtc
301 cacggacggg gccaatattg tagttgctca tgtccacagc cctgcacaaa ctctcagtaa
361 agttcactgt accagaatga agcctgaaga gatcagcgag tacctgatgt tggcgaagga
421 agaggccgag aagaacctag atgaatatgc tctgatagcg aaaagcacag gaaaagatat
481 gaagactgat tgtcagaaag tactaattga catggacgat gtcgcaaaag gactcgagga
541 acttattacc cttcatggca tcaccaggct tgtcatggga gcagccgcag accaacacta
601 ctcagaggaa atgaaagaac caaattccaa gatagccctc aagctgatgg agactgcatc
661 cccatcatgc aagatatggt ttacctgcaa tggccatctg atatgcacaa gggaacccaa
721 tgaaaacctt cttgcaatat atgtgccgcc tgcacaaagc aacacggtac cattgtcaat
781 gtgcagcatt tcaagccaaa tgagttcgat agagctgaag aaagaagcac caagctcaga
841 agaatatact ttaagatcat tggctcaatc ggcaatgagt gattgggact acattttcgg
901 ggattgggga aggacagggt atggttcatt aaggactgat gatgcaataa gtattcctga
961 agccacaact ctagctgcga ttgttgacga tacaaacaaa caaagatcag tgatgcactc
1021 tcctcaggaa tctgacagtg tcaatttctc atcaccagct tgtgatcccc aacaagaaga
1081 agaagaacca aatttagatg aagacatgca tgatatactt aatgaggcat gcactcgagc
1141 tgaactactc aagaaagaag ttgatggtga atctagcaag cgtcgcaaag ctgaaatgga
1201 tctacttata gctcttcaga gagttcaaga gtcagaaaaa tcatatctac aggaggtgaa
1261 ccagcggaaa gaaactgaga ggacacttgc aagacagagg ctggagatcg atgaaatgaa
1321 aaggcgacac aatacattat atgatgaact acaggataca aagaaacaga agcttctgct
1381 ggagcaacat atatctgaga ttaaatctgc tgcaaaagat tatgtacaag agattactga
1441 atattttata caagaatcat gtgaggaagc caagaaattc caaaagatca agatggatct
1501 gcttgcgatg cttcaaagag ttaaagatgt ggagaattta aaccgaaatg aaaagatgca
1561 gaggaaagat atggaggaaa agattgcaag acagaggatg gagattgaag aaacaaaaag
1621 gcagcgagat gaattatacc atgagttaaa agatgtaaag gaacagaagc tctgtctgga
1681 acgacttgat tcatctaaag aaactaagag gagaagaaaa gctgagagcg agatgctctc
1741 cgctcttaag aaggtaagat actaagacgt ttgtttcagt ggtctgtact cagtactatg
1801 aattgcaggt ttgtcatgaa aatgtggagt actcttacag gttcatgacc tggagcatca
1861 gtatctgaat gagttgaaaa ggcgggaagc ggtggaggag acatttgcac ggcaaaaaga
1921 ggaaattcaa gaaacgaaaa gagagctaaa caagatacgt agcagacata tgacagagat
1981 caaagctcat gaagaaaagc ttgcagaaag catccgcttt atccaaaaga ttcaagcaaa
2041 gtatgacaaa acactacatg agagagacac tgccatagca gaatctgaaa aattgcgcca
2101 aatgaacagg gatggagctt caatgatagc aaccacccag atcgccgact tctctttttt
2161 tgagctgcgg caagcaaccc aagactttga tacggcactc aagattggca caggcagatt
2221 tatgaatgtg tacaaagggt tcatacggaa cacggctata actgtaatgt tgcttcatcc
2281 tcagggcctg caagggcagt tagaattcca tcaagaggtt gttgttctca gtagactgag
2341 gcatcctaac gtcatgatgc taataggtgc atgtccggaa gcttttggca tggtgtatga
2401 attcctccca aatgggagcc tcgaggacca gctctcgtgc aagaaaaaca caccaccact
2461 gacatggaag atgcgtacca ggatcattgg ggagatatgt tcagccttga ccttcatcca
2521 ctcacagaag cctcacccgg ttgttcatgg taatctgaac cccatgaaca ttcttcttga
2581 tgccaacttt gtaagcaagt tgcacgtctg ccagcttctc agaaaataca acaccggaaa
2641 taacacttca ggaacatcct cctacattga ccctgaattc ttgtccaccg gagaactcgc
2701 cccacgctgc gacgtgtact ccttcggcat tatcatccta catctactga caggaaaatc
2761 accacagaac atcacaacaa tagtagaaga tgctatggag aaaaggcagc tgcattcaat
2821 catggacacc tccgcaggga gctggccctt cgtgcaggcc aaccagcttg cgcatctcgg
2881 actgagatgc gccaatttga gtggaaggca ccggccagat ctcacggggg aggtgtgggg
2941 ggtgatcaag cctctgctga aggatgcttc ccagaatttt ggatgcaaac aagcatttga
3001 agctctatca gatgacacac aagcaccatc ctactttatc tgcccgatct tgcaggaggt
3061 gatgactgat cctcacatcg cagcagacgg gtacacgtac gaagccaatg ccatcagaaa
3121 ctggctcgac ggcggcaacg ccaggtcgcc gatgacgaac ctgagtctcg aaaaccgcga
3181 gctcacgccg aacagagtgc tccgctcggc tatcctcgag tggcgacagc acaggagatg
3241 acatcaacct attcctcgat gcggactcag ctcatctaga tgcttcatct cacctgtaaa
3301 atatagtggg ggatttctgg tgttacctga acatggcgtg tgcctgtgca gaagtgtgcc
3361 tctaaaatct caatcacc
//