LOCUS AK243124 1262 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100029E10, full insert
sequence.
ACCESSION AK243124
VERSION AK243124.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1262)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1262
/clone="J100029E10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="gamma-irradiated (45Gy), immediately after
irradiation"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
misc_feature 1..1262
/db_xref="Osa1:LOC_Os01g18210"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000541F (Chr.1: short
arm=10190435, long arm=10193389, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 292 a 338 c 328 g 304 t
ORIGIN
1 ttggggaatc gaatccgata agccaagcaa gcgcagacgc cgacgcagga gctcccccac
61 cgccatggct tgcaggccgg ccgtgtgctc cccctccgcc ctcgcgccgc cgcgccaccg
121 cctcctctcc ctcggctgcg cgcgcaccgc cgccccctcg ggcggactcc cgctccgcct
181 ccgcctccgc tccagccccg cgccccgcgg ccacggcgcc gacctcgtcg tccgcgcggc
241 ggccgcagag ggggccgtgg agctgcaggc gaaggtgaac agcaaatgct tcttcgacgt
301 cgaggtcggc ggggagcccg cggggaggat cgtcatcggg ctcttcgggg aagtcgtccc
361 caagacggtg gacaacttcc gcgccctgtg cactggtgat aagggctacg ggtacaaggg
421 ttgctccttc caccgaatca tcaaggactt catgattcag ggcggggact tccagaacaa
481 caatggtact ggtggtagga gtatctatgg tgaatgtttt gacgatgaaa attttacatg
541 taagtaattc aatcctagct tgctgtgatg agcttggggt gttctttccc cctagcagtt
601 gactgcaact gctttaggca gtcacaacaa ccctgttgtt atgtactcga acctttctcc
661 catatcttaa taaaatcagg cggcatcctt ccaccagccc agcgaaaaaa aatacaaact
721 ttcaaattta gtaccatgcg ttattgtaac tatccagaac ataccaatca attgaagcaa
781 cgataactac aaaggtgcta atctttagta aagcacaccg gtcctggtgt actaagcatg
841 gcaaacgctg gccctgacac aaatggaagc caatttttca tttgtactgt gaagacacca
901 tggttggaca atcgtcacgt tgtctttggg catgtcttgg aggggatgga cgtggtgaag
961 aatcttgaat cacaagaaac cagcaggtcc gatattccta agcagccctg cagaatcgtg
1021 aattgtggcg agctgcccgt ggacggttga ttaagtcaaa tggttcagtt gtcggattaa
1081 gccaacattt ttcattttgt tttgcggcat attgaatctt aggggagggc taattgaatc
1141 ttgttctgtt agaacacttt tggtatagtg aggatacttg cgaggcattc ggcaagatag
1201 atgaacatcc ctcttatcca gtgatatcct gtttgatgag cttagaactt taagttactc
1261 tt
//