LOCUS AK243124 1262 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J100029E10, full insert sequence. ACCESSION AK243124 VERSION AK243124.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1262) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1262 /clone="J100029E10" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="gamma-irradiated (45Gy), immediately after irradiation" /organism="Oryza sativa Japonica Group" /tissue_type="root of seedling" misc_feature 1..1262 /db_xref="Osa1:LOC_Os01g18210" /note="(Rice Genome Annotation Project) peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed" /note="mapping to R01-TIGRv4S1-000541F (Chr.1: short arm=10190435, long arm=10193389, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 292 a 338 c 328 g 304 t ORIGIN 1 ttggggaatc gaatccgata agccaagcaa gcgcagacgc cgacgcagga gctcccccac 61 cgccatggct tgcaggccgg ccgtgtgctc cccctccgcc ctcgcgccgc cgcgccaccg 121 cctcctctcc ctcggctgcg cgcgcaccgc cgccccctcg ggcggactcc cgctccgcct 181 ccgcctccgc tccagccccg cgccccgcgg ccacggcgcc gacctcgtcg tccgcgcggc 241 ggccgcagag ggggccgtgg agctgcaggc gaaggtgaac agcaaatgct tcttcgacgt 301 cgaggtcggc ggggagcccg cggggaggat cgtcatcggg ctcttcgggg aagtcgtccc 361 caagacggtg gacaacttcc gcgccctgtg cactggtgat aagggctacg ggtacaaggg 421 ttgctccttc caccgaatca tcaaggactt catgattcag ggcggggact tccagaacaa 481 caatggtact ggtggtagga gtatctatgg tgaatgtttt gacgatgaaa attttacatg 541 taagtaattc aatcctagct tgctgtgatg agcttggggt gttctttccc cctagcagtt 601 gactgcaact gctttaggca gtcacaacaa ccctgttgtt atgtactcga acctttctcc 661 catatcttaa taaaatcagg cggcatcctt ccaccagccc agcgaaaaaa aatacaaact 721 ttcaaattta gtaccatgcg ttattgtaac tatccagaac ataccaatca attgaagcaa 781 cgataactac aaaggtgcta atctttagta aagcacaccg gtcctggtgt actaagcatg 841 gcaaacgctg gccctgacac aaatggaagc caatttttca tttgtactgt gaagacacca 901 tggttggaca atcgtcacgt tgtctttggg catgtcttgg aggggatgga cgtggtgaag 961 aatcttgaat cacaagaaac cagcaggtcc gatattccta agcagccctg cagaatcgtg 1021 aattgtggcg agctgcccgt ggacggttga ttaagtcaaa tggttcagtt gtcggattaa 1081 gccaacattt ttcattttgt tttgcggcat attgaatctt aggggagggc taattgaatc 1141 ttgttctgtt agaacacttt tggtatagtg aggatacttg cgaggcattc ggcaagatag 1201 atgaacatcc ctcttatcca gtgatatcct gtttgatgag cttagaactt taagttactc 1261 tt //