LOCUS AK243031 2453 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J100004F15, full insert
sequence.
ACCESSION AK243031
VERSION AK243031.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2453)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2453
/clone="J100004F15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="gamma-irradiated (4min), after 10hr"
/organism="Oryza sativa Japonica Group"
/tissue_type="root of seedling"
misc_feature 1..2453
/db_xref="Osa1:LOC_Os05g32210"
/note="(Rice Genome Annotation Project) NAD kinase 3,
putative, expressed"
/note="mapping to R05-TIGRv4S1-000595F (Chr.5: short
arm=18695754, long arm=18703676, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 631 a 604 c 559 g 659 t
ORIGIN
1 ctctctggcc catcagtttg tcgcgtccat ccatccatcc atccattgcg ggccttcgat
61 ccatccccaa ccgcgccacc catcctcgcc gacgctcgcg cagccgcacc cgcacagcgc
121 cgccgatcga ccccgtcgcg gatccgcgct cctcgccgcc ggcgaaccgc cgtccgcccc
181 gccccgcccc accgcagtgc ccgcgcacgc actgcccccc tcgtgccgca gcccgcagtc
241 ggcgacggtc cctcctccgg tggcggtgat ctcgtcgctg gacgtacggt gcttcgctcg
301 accagccacg acagcgcggg ccccgcgtgg ccgcgtcgag ggtccttccc tccctccctc
361 atccacctcc aggctccccg tcgccgcccg aggctatgga tggccggcgc ttggattgtg
421 atgggagagt aaaccttagt gtggctacct cagatcagac cttagatagt tcaatggaat
481 cagagagggc agcttatgcg tttcttcccc aaactccaat caagtcaacc gatgcacacc
541 tcgttgagtt ctcggaggct atgagagctg ttgcgaaaac attgcgacaa gttgcagaag
601 ggaaagctgc tgctcaagca gaggcagctg agtggaagcg caagtatgaa ttagaaaagg
661 cagtcaaggc acacaggcat aatactgtaa ccaaaggctg cagtaactgt gacaaggaaa
721 agttagagca gttggctagt cagctgacat tggagaccac gtcggttgat ccaacaagtt
781 gctgcggaaa tcatgagatc tgttcacgtc aaattctcca ggacgaatgc cctggaacta
841 ataaaatttc gcatgacaag attgctgcaa gaaaggcacc atttaaactt tcatggggat
901 gcaatgggga taataatggt cagcacaagc atgattttgt atccttcgaa aaaggggata
961 taacaacagc tgaacgcagc aataagcaga ttttgctaaa gtgggaatcc cctccacaaa
1021 ctgttctttt cgtgactaaa cctaattcca actccgtgca cgctctctgt gctgaaatgg
1081 ttaggtatgt tttctttctg ctctgtgtgc caacatggtc aggtatgtca aaggttttat
1141 attttatcaa tcatctgagt tcggcattaa aaatagcttc ttttttgttt ctggaacttg
1201 tcctctccta atttacttat gttaagcaga ttttgttgat aaataatgtt gcatggaatt
1261 gtatattttt cattcaatat cgttgtttca cttgtgctaa tgtctgccgt tctccgcaga
1321 tggcttaaag agcacaataa tataaacatc tttgtagagc cacgagttag caaggaacta
1381 gtgactgaag attcatactt caactttatc caaacatggg ataatgatga ggaaatgaag
1441 acattacaca cgaaggttga tctcattgta actcttggag gtgatggaac agttttatgg
1501 gcagcatcat tgttcaaagg accagttccc cctgttgttg cgttctctct tggatcattg
1561 ggattcatga cccccttctc aagtgagctg tatcgtgagt gtttggacca tgtgctgaaa
1621 aggccatttg gcatcacact aaggagtcgt ctgcagtgtc atgtaatcta cgattcagct
1681 aaaaatgaag ttgatacgga ggagccaatt ctagtgctga atgaggttac aattgaccgt
1741 gggatgtcat cgtaccttac ctacttagaa tgctattgtg acagttcttt tgtcacacgt
1801 gttcaaggag atgggttaat aatatcaaca acatctggaa gcacagctta ttcattggca
1861 gctgggggat cgatggttca tccacaggtc ccagggatcc ttttcacgcc aatctgtccc
1921 cattcattat cattcaggcc tttgatacta cctgaatatg tgacattgcg tgtgcaagtg
1981 cctggtggac tcaacaactg acttcctgcg aagcatccat gagggcctcc actggaacct
2041 gaggaagagc cagtcgtttg atggccctgt tgcatgatca atgaacttct ggtctggaaa
2101 attcgatgcg tctgttgaat tggtagatgt ggtatttcaa agcatctcct caacagtcca
2161 agagaaagag aaaaaaaaaa aaaccctaat cagatgtatg tacctacgtc agttatgccg
2221 ttaattgtct aacagatcat ctcctttacc attctctgta cacaagattt gtactgtttc
2281 tagtatattt tgggcttata ggtctgtgca gagtccaaag gcatgcccac catgtccatg
2341 taaagcgctt ttacatgatg aagagtcttt gtacaagaag caattgagca gacttcttca
2401 ctgctatttt cttcttcaca aaaatatatg aataaataaa ttaaatcttc tcc
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