LOCUS AK243016 1817 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090098K14, full insert
sequence.
ACCESSION AK243016
VERSION AK243016.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1817)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1817
/clone="J090098K14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 576..1661
/db_xref="Osa1:LOC_Os08g13930"
/note="(Rice Genome Annotation Project)
mannose-1-phosphate guanyltransferase, putative,
expressed"
/note="mapping to R08-TIGRv4S1-000292R (Chr.8: short
arm=8335909, long arm=8340212, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01407.1"
/translation="MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEV
GVTEVVLAINYRPEVMLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSG
EPFFVLNSDVISEYPFAELIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKF
VEKPKIFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWM
DVGQPRDYITGLRLYLDSLRKRSANRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIG
PGCVVEDGVRLSRCTVMRGVRIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHVG
DEVYTNGGVILPHKEIKSSILKPEIVM"
BASE COUNT 401 a 475 c 462 g 479 t
ORIGIN
1 ggcagcgcgt taattcctct ccctcagtcc ctctctccgg ccccctcctc ccccaccggc
61 aacgccgctt cccctaccct tcagccagcg cgccctccct ctccccccac cgacgacgtc
121 gcttccccta ccactcaccc agggcgccct tcccttccct tggcagccgg cgtctcagcc
181 gcggtgccct ccccctggct cctcggcggc gtcctcaccc tcttctccgc cacaacacaa
241 cggacggtat cgacagcctc ggcggcggca ccctcctcgt agaagcggcg tcctcgcctc
301 ccatgaccag tggcgtcgct gatttagttt tttgttgtgc agtactgtgc tgggctggtg
361 ggctgcttct cctccgctct gtgggctcgc tggtgggctg cggctgctat ctgggccggc
421 ctgctgctgc tttgggtggg ctgcctcgtc actaatccaa tccgggctgc tttggatggg
481 ctgctccaca aacaaggttc cccttcccaa gccttgcttg aggatccctc cgccggagta
541 gggattaggg agggaagaac aggaggcgat tcaccatgaa ggcgctcatt ctggttggag
601 gcttcggcac tcgccttcgg cctttaacgc tcagtttccc aaagcctctt gttgatttcg
661 cgaacaagcc catgattctg catcagattg aggccttgaa agaagttgga gtaacagaag
721 ttgttttagc catcaactac cgcccggagg taatgctcaa tttcctgaag gactttgagg
781 ataagcttgg catcacaatc acgtgttccc aagagactga gcccttggga actgctggcc
841 ctcttgctct agcaagggac aagcttgtgg atggatctgg tgagccattc tttgtcctca
901 acagtgacgt cataagtgaa tacccttttg ctgagctcat aaaatttcac aagaaccatg
961 gtggtgaggc aacaattatg gtcaccaagg tggacgaacc atcaaaatat ggtgttgtgg
1021 ttatggagga ggccactgga atggtggaaa aatttgttga gaaaccaaaa atatttgtag
1081 gcaacaagat caatgcagga atttacttgt tgaacccgtc tgtcctggac cgcatcgagc
1141 taaagccaac ttcaattgag aaagaggtct ttcctcgaat ctcagctgat gcaaagctct
1201 ttgctatggt ccttccaggt ttttggatgg atgttggcca accaagggat tacattacag
1261 gcttgcgcct ttatctggat tcacttagga agagatcagc caacaggtta gccactggag
1321 cacacattgt tgggaatgtg ctagttcacg agagtgcgaa gattggcgaa ggctgtctga
1381 ttggtcctga tgttgctatt ggtcctggat gcgtcgtgga ggatggtgtg aggctttccc
1441 gttgcacggt gatgcgtggc gtgcgtatta agaagcatgc ttgcatatca aacagcatta
1501 ttggatggca ctcaactgtt ggacaatggg cacggataga aaatatgact atcctaggag
1561 aggacgtaca tgtaggtgat gaggtctata ccaacggcgg tgttattctc ccgcacaaag
1621 agatcaaatc aagcatcctg aaacctgaga ttgtcatgtg aaataatcct ttttatgtta
1681 tggtatactc aagttctttt aatgcagtat agatacttta taattgtgat ccttccaaga
1741 tgttgacata gcatgtatgt tactcacatt ctgataactg cttctcaatg agaattcagt
1801 gagccatatt tgattgc
//