LOCUS AK242908 2389 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J090082L19, full insert
sequence.
ACCESSION AK242908
VERSION AK242908.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2389)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2389
/clone="J090082L19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="5 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
misc_feature 1..2389
/db_xref="Osa1:LOC_Os01g62780"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R01-TIGRv4S1-001669F (Chr.1: short
arm=36679920, long arm=36685384, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 689 a 592 c 510 g 598 t
ORIGIN
1 gtttttactt gcttccccca tcggtctccc tctggcgcgc cgctttggct tttccgaaag
61 gaagccagtc atccatctcc cccgatttaa cccgacgccg tgccgctagt ctgatccgcc
121 accgccacgg tctcctcctc gcccccgtgc ctccgcctcc tcctcctccc gtccagcccg
181 tatcgacgag accagcaagg cgccgccgcg cgcggagctc tcgacgcccg ccgacgaccc
241 gcccgccgtc agatccgcct gctgcatgct tcctccagga tttcagtatg actgaacata
301 taaattatga tgtggtggag cagtgtgttt aaaaacatcc tctctctaat caaaccagtg
361 gaggatgaca gacgcaaacg actatctgca attcaggagt tatcaaattc cattcctaaa
421 gttgcagcct taagaggtgc tgttttcaaa ccttttggat cctttgtatc aaatctttac
481 tcaaattcag gtgatttgga tatatcggtt cacctcccta ataactcaat cataagcaag
541 aagaaaaagc aatatgtctt gagggaatta atgagagtgc tacaaaatag aggtgttgcc
601 ggatatgtgc aatttgttcc ttttgcaaga gttccagttc ttcagtatgt gagcaacacc
661 ttcggaattt cctgcgatat atctgtgaac aactaccctg gtcgaattaa atccaaaatc
721 ttctgctgga tcagttcttt agatgtgcgt tttggtgata tggttttact gatcaaagaa
781 tgggcgaaag ctcaaaacat taatgatccc aaaactggga ccttaaactc ctattcactt
841 tgcctactag tcctcttcca ttttcaggta atattcatct gtggtatttc aagttatact
901 gatacatgat tttaggaata tccttgttac tgtctttacc ttattccaga catgtgagcc
961 tgcaatcctt ccacctctta aggagattta tgaagggaac attgaagaag aaatgacggt
1021 gtatgatgag gaacatcttg atgaggtttg ctctgaaaat ttagcaaaat ttcaaagcaa
1081 gaacaaggaa cgaaggaatg aaagctctct ttgccatctg cttgcaacct ttttccacaa
1141 attttcctct atcggcaccc tttcgggtga tgtgatatcc acttacacgg gccagttcaa
1201 acgaatagag gagaacccaa gttggatggc cagatcatac agcttatttg tcaaagatcc
1261 aattgagaga cctgataatg ccgctagagc ggttgatttg aaaggccttg agcggattgc
1321 tggggccttc accgctgcta atcgtaagtt tgcatctctc caacacgcca aacgaaatga
1381 cttactggag atgctgtgta cgcctgctgt tggctcaaag cttggcataa gagttagcca
1441 agaagttatg gctaactctt gcacaaatac tccacggagg aaccgtcatc atggtagacc
1501 aacggaacaa gtctcagcga ggccatctga taatcaaaat caccgcgggg ccagagaatt
1561 tacagttggg agacaagttc ataatccccc acgggcgcgc caatcaactg gagcgtacca
1621 tgctcttaac agtcagcatg taattcctgc attgagccaa ccagcaggaa tttatcaaac
1681 agttggccca taccagagta atggtcatcc acaggtgtat actagagatg tccaaacagt
1741 agggcaccaa aattataggc atccaatggg acacaacaca cagctccaaa cagtggaacc
1801 atatcagagt aataatagtc aaccacaggt tcatgctacc agcatccaag caccaagaca
1861 ataccagaat tatactcgat aacgcccggc cagaaactac aatcaccaag tgttacatgc
1921 tacagcgacc gagacaacgg ccagaaacta caatcaccaa ttgttacatg ctgcagcaac
1981 cgagacaacg gccagaaact ataatcacca atcgttacat gctacagcaa ccgagacaga
2041 aggatcatac cggaatcagc agcagagaca acacacatct ggccgtcaaa caaataggaa
2101 cgctgtgaac acaaggtacg tgcctgttgt tggaaggcca caaaatgtag catgtgaatc
2161 acgagctcaa gactcctcag gcaggggaac atggcaacaa agggagccgc gagcaggatc
2221 aacctaccaa aatagatagc aacggattat cttcagcttt tgcatcgcag tgtgtatgag
2281 tttttggtag tttgtgatag ctttcgtcag ccagcagttt gatctcagtg ccgctgcaat
2341 gcagcgaact gtattgggta aaatgcagtt acaagatttt cttttgtgc
//