LOCUS AK242226 1520 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert
sequence.
ACCESSION AK242226
VERSION AK242226.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1520)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1520
/clone="J075175B02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="15 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
CDS 115..1380
/db_xref="Osa1:LOC_Os01g01290"
/note="(Rice Genome Annotation Project) histone-like
transcription factor and archaeal histone family protein,
expressed"
/note="mapping to R01-TIGRv4S1-000015F (Chr.1: short
arm=136627, long arm=138357, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAH01232.1"
/translation="MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAI
PMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDI
AEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLFA
PTYTPAIPITPSLMPPISHYIPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGL
QGNNISTFANNNIPDNIIGCSSPAVLASMMSPALLDVAGASLNPPNSHSICTMNMINS
SDPSGSSIGDINVANQASLAPSEHFNPAILQESSCPSFLYNNNNDTIVVVPEGVDISG
TMDVAGLVINGQEEEHERKTNVEQNEIYESIDIGIINASVADGNKCSIRWDELGTADD
SLLDKFLEEFQARNDGVLHSGIVLHEDHS"
BASE COUNT 447 a 319 c 320 g 434 t
ORIGIN
1 tcggtgtcat attgtgttca tcttcatact accaaccaat tagtgctaat aggtagcatt
61 ttctgcagtt gcagctcaag taaggtctat tattcggagc aacaaaggga aggaatggag
121 caaactttgg acgtacctag atcgttgagg ctaccgacac caaaggctca acaacaaatg
181 gatgaatttt ggagggatcg acaaaaagag attgagacaa caaaggactt tagcgagcat
241 gcgatcccta tggcccgctt gaagaagatc gcatcttctc aaaagggtaa catgatgatg
301 tcctttgaca tgccagcatt cttatcgaag atgtgtgagc tcttcgtaca agaacttgct
361 gtgcgtgcat gggcatctgc tcaatcccat aaccgttgca tcatactaga cacggatatt
421 gctgaagcca ttgcctccac agagtcttat gactttcttg ttgatatcct ccataatcac
481 cgtgagaagc acaaatccac tccttgttct acacttacta caaagcgttg taggttagtc
541 gatcaacctt ccacatctcg cccgccctac caacatcagc tgccactgtt tgctcctaca
601 tatactccag ccatccctat tactcctagt ttaatgccac caatttctca ctatataccg
661 ttccaatatc catccttatc acaagaagtg tccacgatga tggcttccgc acccatagtg
721 aatagatcaa tgttgctcat tcacaacata gcaaggggtc taggcttaca aggaaacaat
781 atcagcacat tcgccaacaa taatatccca gacaatatta ttggttgtag tagccccgcg
841 gttcttgcaa gtatgatgag tcctgcttta ctagacgttg caggggcatc actaaatccg
901 ccaaactctc actccatctg cacgatgaac atgatcaact cgagtgatcc cagtggatct
961 agcattggtg acattaatgt tgcaaatcaa gcaagtcttg ctccctctga acattttaac
1021 cctgctatcc ttcaagagtc ctcatgtcct tcgttcttat ataataacaa caatgacacg
1081 attgttgttg taccggaggg tgtagatatt agtggcacca tggatgttgc tggtttagtt
1141 atcaatggtc aagaagaaga acatgagagg aaaacaaatg ttgagcaaaa tgagatatat
1201 gaaagcattg atataggaat aatcaatgca agtgttgcgg atggtaataa atgcagtatt
1261 aggtgggatg aattaggaac ggccgatgat tcattgctag ataaattttt ggaggagttt
1321 caagcaagaa acgacggtgt tttgcacagc gggattgtgt tgcatgaaga ccattcctag
1381 gtgacgtgat tttagcaaac ccaagtagta gcaatgccaa tataagtaat tgagttggca
1441 agttttgttt atgtcttttg taagaatgag gttgtaactc tttttcttgt tgaatataat
1501 gttgtttgtt tggagagaag
//