LOCUS AK242120 1730 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J075147C14, full insert
sequence.
ACCESSION AK242120
VERSION AK242120.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1730)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1730
/clone="J075147C14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="20 days after pollination"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="pistil"
misc_feature 1..1730
/db_xref="Osa1:LOC_Os01g39850"
/note="(Rice Genome Annotation Project) histone-like
transcription factor and archaeal histone family protein,
expressed"
/note="mapping to R01-TIGRv4S1-000906R (Chr.1: short
arm=22801414, long arm=22803352, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 509 a 358 c 373 g 490 t
ORIGIN
1 ttcggtgtca tattgtgttc atcttcatac taccaaccaa ttagtgctaa taggtagcat
61 tttctgtagt tgcagctcaa gtaaggtcta ttattcagag caacgaaggg aaggaatgga
121 gcaaactttg gacgtaccta gatcgttgag actactggcg ccaaaagctc aacaacaaat
181 ggatgaattt tggagggatc gacaaaagga gattgaaaca acaaaggact ttagcgagca
241 tgcgatccct atggcccgct tgaagaagat cgtatcttct caaaagggta acatgatgat
301 gacccttgac atgccagcat tcttatcgaa gatgtgtgag ctcttcgtac aagaacttgc
361 tgtgcgtgca tgggcatctg ctcaatccca taatcgttgc atcatactag acacggatat
421 tgctaaagcc attgcctcca cagagtctta tgactttctt gttgatatcc tccataatca
481 tcgtgtgaaa cacaaatcca ctccttgttc tacacttact acaaagcgtt gtaggttagt
541 cgatcaacct tccacatctc acatgcccta ccaacatcag ctgccacaat ttgctcctac
601 atatactccg gccatcccta ttactcctag tttaatgcca ccaatttctc actatatacc
661 gttccaatat ccatccttat cacaagaagt gtccccgatg atggcttctg cacccatagt
721 gaatagatca atgttgctca ttcacaacat agcaaggggt ctaggcttac aaggaaacaa
781 tatcagcacg ttcgccaaca ataatatccc agacaatatt gttggttgta gtagccccac
841 agttcttgca agtatgatga gtcctgcttt actagaagtt gcagggacat cactaaatcc
901 accaaactct cattccatct gcacaatgaa catgatcaac tcgagtgatc ctagtggatc
961 tagtattggt gacattaatg ttgcaaatca agcaagtctt gctccctctg gacgttttaa
1021 ccctgctatc cttcgagagt catcatgtcc ttcgttctta catagtaaca atgacacaat
1081 tgttgctata ccggagggtg tagatattag tggcaccatg gatgttgcta gtgatgttgc
1141 tgctatagtt atcaatggtc aagaagaaca tgagagggaa acaaatgttg agcatcatca
1201 gcaaaatgag atatatgaaa gcattgatat aggaataatc aatgcaagtg ttgcggatga
1261 taataaatat agtattagct gggatgaatt gggaatggct gatgattcat tgctagacaa
1321 atttttggag gagtttcaag taagaaatga cggtgttttg cgcactggga ttgagttgca
1381 tgaagaccca ttccttggtg acgtgatgtt agcaaaccca agtacaagca atgccaataa
1441 gtaatttagt tggcaagttt tgtttatatc tcttttgtaa gaatgaggtt gtaacttttt
1501 cttgttgaat ataatgttgc agcggcggac ctatgtgggg tgccgggtgt gcaccggcat
1561 aaaaatatag tatgtagtat tagcagcggg ccaaatcaat agattggtgc ctcgttggat
1621 caaaagcaag gcctacaagg cccaacgtgc tagcagggag gcagcccaat ctgctagcca
1681 atgtgccatg tgctgctaga gtctgggaga aaattggatt atattatcgc
//