LOCUS AK241918 1384 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J075073G20, full insert
sequence.
ACCESSION AK241918
VERSION AK241918.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1384)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1384
/clone="J075073G20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/dev_stage="2 weeks after flowering"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="ear"
misc_feature 1..1384
/db_xref="Osa1:LOC_Os01g73460"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase ATXR6, putative, expressed"
/note="mapping to R01-TIGRv4S1-002039F (Chr.1: short
arm=42895000, long arm=42899924, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 384 a 282 c 331 g 387 t
ORIGIN
1 tgcgacgtgt gcgggtccgg ggagcgggac gaggagctgc tgctgtgcga cggctgcgac
61 cgcggccgcc acaccttctg cctccgcccc atcgccgcca gggtccccac cggcccctgg
121 ttctgcccgc catgcgcccc gcgctccaag cccgtcaaaa ggttcccgat gactcagacg
181 aagatcgttg atttcttccg gattcagaag ggcgcagagg atgccgaggc ggagaaatat
241 gggctttttc aagatgttaa gaagcgaaga aagcgttccc ttgttatgca caagaagagg
301 aggaggatac tgccatatgt cccaactgaa gataaagttc aaaggctcaa acaaatggct
361 tctctagcca ctgctatgac atcttcgaag atgaagttca gtaatgagct gacttacatg
421 cctggtatgg ctgggagatc gtgtaatcaa gctacactgg aagaaggtgg catgcagatt
481 cttccaaaag aggataagga aactatagaa ctttgcagaa ccatgcaaaa aaggggagaa
541 tgccctcccc ttcttgtggt gtttgattca cgcgaagggt tcacagtgca ggctgatgct
601 gatattaaag atatgacctt catcgccgaa tatactggag atgttgattt tttggaaaac
661 agagcaaatg atgatggtga cagtataatg actcttcttt tgacagaaga tccttccaaa
721 aggctggtta tttgtcctga taagcgtgga aacatttccc gtttcattaa tggcattaat
781 aatcacactc tggatggcaa aaagaagaag aatattaaat gtgtccggta tgacatagat
841 ggtgagagcc atgtcttgtt ggttgcctgc cgtgatatag cttgtggtga gaagctatat
901 tatgattaca atggatatga gcatgagtac ccaactcatc attttgtcta acttagtcta
961 gttttgttac ctgcccagca ttaaggaccc tgggcaagtg tagggcttaa tggcaacatt
1021 ttcagcattg ccaccaaaat ccaataattt ataacatata tctttggtac aaatgaaaag
1081 ttaaaaccaa ttttcagaag cagccctgaa tgacaaaaat gtaggtgctg gtgatattag
1141 gagtgagagc aatcttctca gctgttggga caagaggaat cttcattttt cctggtctcc
1201 aagatgcaat cttctcattg atatttttta tttattctgg agcttcctgc tcaaattctc
1261 ttctttttag ggattttcat ccctttatgt gggagtaaat atgtgtcttt gtatctattt
1321 aaaagagtga tgtaatgagg cagtaactgc tcccttttaa ataaagacac atttttcatt
1381 ggag
//