LOCUS AK241459 1715 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065164E04, full insert
sequence.
ACCESSION AK241459
VERSION AK241459.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1715)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1715
/clone="J065164E04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="germinating seeds"
misc_feature 1..1715
/db_xref="Osa1:LOC_Os08g09700"
/note="(Rice Genome Annotation Project) F-box domain
containing protein, expressed"
/note="mapping to R08-TIGRv4S1-000234F (Chr.8: short
arm=5596277, long arm=5600971, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 489 a 338 c 387 g 501 t
ORIGIN
1 gatctctaag cacttctacc taacgaaacc aaagaggaga agacttgtgt tagtcggtgc
61 catggacgag ttagggatca tcgagcaagg cgtcgactgg aggactcgcc ttggccaaga
121 cattcgcgat tgcatgataa atgatatatt gttcagcctg caaacgaaat tgcaaagtac
181 tactacagca ttgattgatc tccagaaggt tgctgtcaga atagaggaga ggatccatac
241 gatagctagt gactatggtg attatctacg gaggatttgt ctgacaagag gtgatttgga
301 ctcatatgat gtatttttga atgattgtca acgtcagcaa gcttcaatcc gttcatccat
361 cttgctccat caggagaata agcaaggtga tcaaattgtc caggcaaaaa gaaatattaa
421 ggggacatca tctagcagtg tgctatctaa tcaagtagcc ctaaatgacc acaaggagca
481 ctcacacccc tacgagaagg atatgatcag caaactccct aacgatttgg tccaacatat
541 tatgtcattc ttgtcaatgc gagaggctgt gcgcaccagt gttttgtccc attggtgggt
601 caaccagtgg accttcttga agtccattca gcttaatata tattggtttc atatggacag
661 agaaaaattc agtagtttcc ttgacaaact attgctaagc cgtgtccaag ctgatgctcc
721 catggacaca ttcgagctaa aatcttttgc aattgaccgc gccaattatt ggattaatca
781 tgcaatcaag cacaatgcta aagtgcttaa atttgctgaa tatggaaaat gggaaccttt
841 ctacttggat ccaaatcttg tggagttaag ttctcggtat ctagaaactt tggagctgac
901 taatgttgct ctagatgcga cgatattcaa tcagttggcc aatgcatgcc cagcattgca
961 aaatatgctg ctgacagact gcttactgga ggtagaagaa atttcatcaa gctcattgaa
1021 gaatctggat ataattgact gctatattct caaggacctg agcatttgta ctcctagttt
1081 ggtttcattg tgcatcaaga atgaaagaac agacaattct tcgttcagaa actcttacct
1141 aatattcgca acggccatta tcattgatgc ttcaaatgtc agtagcatgg agttgttagc
1201 tatggataga cagttcacat tcgtggagaa agacgggggc gagccaatgt tcaagaatct
1261 cagaaacttg agcctaggtc tatggtgcat taacaacatg ttttcgcctc tacgtcgatt
1321 cgtccggcat tcgcctatgc tgaggatggt gactctgagg atcagtccgc tggattggaa
1381 gtcccatctc acgaaggaac atcaggagat gctgatcagc attcgtgatc gtcgtggcct
1441 gattctttat atcgattggt attgaaggcc aagggcttct gcggtgctcc aatggtgaat
1501 aaaattgctg ccaaattaag ctggttgctg aaacattgag accaatttaa gtttcttttc
1561 gttttaatcg cagtggatca aacttgttgc agtaataatt acctgttact tgactgcatg
1621 tgtcagcctg gagtctggat gttgtctttg atgtggtgtc attgttactt atactgtttc
1681 attatatgga tgaaccaatg agtctttaag aaccc
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