LOCUS AK241438 1521 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065162G03, full insert
sequence.
ACCESSION AK241438
VERSION AK241438.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1521)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1521
/clone="J065162G03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/note="gamma-irradiated (9.5min), after 10hr"
/organism="Oryza sativa Japonica Group"
/tissue_type="leaf of seedling"
CDS 44..1015
/db_xref="Osa1:LOC_Os06g43860"
/note="(Rice Genome Annotation Project) homeobox protein
knotted-1-like 3, putative, expressed"
/note="mapping to R06-TIGRv4S1-000963R (Chr.6: short
arm=26410492, long arm=26413778, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01032.1"
/translation="MAFHYQDHALAMDAAAAAAETGGHHHPGFVGAGGVVGGGGGGGW
EREKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAA
AGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGAS
PREGSGATMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHE
LKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQET
GLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKRSNAGDGKAEQSW"
BASE COUNT 382 a 340 c 445 g 354 t
ORIGIN
1 ctcctccacc tcgcgcgctg cagcagcagc agcggtgcgc gtgatggcgt tccactacca
61 ggaccacgcg ctggcgatgg acgccgcggc tgcggcggcg gagacgggcg gccaccacca
121 ccctgggttc gtcggggcgg gaggagttgt ggggggagga ggaggaggag ggtgggagcg
181 ggagaaggcc gccatcgcgg cgcacccgct gtacgagcgg ctgctggagg cgcacgtcgc
241 gtgcctccgc gtcgccaccc ccgtcgacca gctgccccgc atcgacgcgc agattgcggc
301 gcgccccccg ccgctggccg ccgccacggc cgcagcggcg gccgcggcgg ccggaggggc
361 gccgtccggc ggcgaggagc tcgacctctt catgacccat tatgtattgc tcctttgttc
421 gttcaaggaa caactacagc aacatgtgcg tgttcatgca atggaagcag taatggcttg
481 ctgggaactt gaacaaactt tacagagcct tacaggggca tctcctcgtg aaggttctgg
541 agcaactatg tctgatgacg aagacaatca ggttgatagt gagagcaaca tgtttgatgg
601 aaatgatgga tcagatggta tgggctttgg ccccttaatg ctgacggagg gcgagagatc
661 attagttgag cgtgtacggc aagagctgaa acatgagctt aaacaggggt acagagaaaa
721 gcttgtggac attagggaag agatactccg aaagcgaaga gctggaaaac tcccaggaga
781 tacagcgtct actttgaaag catggtggca ggctcactct aaatggccat acccaactga
841 ggaggacaag gctcgcttgg tgcaggaaac agggttgcaa ctaaaacaga tcaataattg
901 gtttatcaac caacgtaaac ggaactggca cagcaatcct gcttcatcct catcagacaa
961 aagcaagaga aaaagaagca atgcaggtga tggcaaggcc gagcaatctt ggtagaacgt
1021 ggttggagaa gaagtatata tatgtaaata atgcatccat tgtgaagaat gccagtatat
1081 ttattgctcc caagatggcg attcggacag aagcttcctg gggctaattt atacgaaaga
1141 aattatgtca tgttataatt ttagtcatgt gaagctatag tgcgtatata tagtgactta
1201 ccagagagta gtttttatgt ttgctgttgg ctagtgtgca tttgtagttg ggacgtgctg
1261 gctgtctctc tacagctcgg tacaaccatg tatttataac gtgttgtgaa gcatatgttg
1321 taaaatcgtg gaatgggagt gttctgcgat ccccatatgt tgttgtaatg ttgtatattg
1381 atgaccatgc tgcaacggca gcatgtttgt aactcgttat atcctcaggc tcttgtgttg
1441 ttacaaatta cagaactata ttgtctttaa cgagcatctc ctgttgaatt aataatagcc
1501 agacagtcag atttttgttg g
//