LOCUS AK241312 1526 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert
sequence.
ACCESSION AK241312
VERSION AK241312.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1526)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1526
/clone="J065141L09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="germinating seeds"
misc_feature 1..1526
/db_xref="Osa1:LOC_Os01g19694"
/note="(Rice Genome Annotation Project) homeobox protein
OSH1, putative, expressed"
/note="mapping to R01-TIGRv4S1-000571F (Chr.1: short
arm=11163820, long arm=11171229, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 343 a 387 c 462 g 334 t
ORIGIN
1 cagagctgct gaattccccc atgagcctct gcctccctgc ctgcccccgt atgtagcaag
61 aacaagaaca ccagcgagta acacaggctc gctacagtgg tactagatta ccgcttgtgc
121 gggcatagtg atcgtctata gttgtgaatt gcgatgcagc agcataggtg gtgagctgct
181 gcggctgctg ctgctggtac gtagatggag gatctgtaca gcatccaccc ggggatctcg
241 cgggtcggcg gcgcggcgag cgaggcgtcc ggcgtgggcg tcgtcgtcgg cggcggcggc
301 gggtcgtcgt cgtcggatct gacggagctc atgaaggctc agatcgccgg tcacccgcgc
361 tacccgaccc tcctctccgc ctacatcgag tgtcgcaagg tgggagcgcc tccggaggtg
421 gcgtcgctgc tgaagtagat cggccgggag aggcgcgccg gcgacggcgg cggcggcgcc
481 gggcagatcg gcgtcgaccc cgagctcgac gagttcatgg aggcgtactg ccgggtgctg
541 gtgcgctaca aggaggagct gtcccggccg ttcgacgagg cggcgtcttt cctcagcagc
601 atccagacgc agctcagcaa cctctgcagc ggcgccacct cgccgccggc caccaccgcc
661 acgcactccg atgaaatggt ggggtcctcc gacgaagacc agtgctcggg ggagactgat
721 atgctagata tagggcaaga gcaaagctcc cgcttagctg accacgaact caaggaaatg
781 cttctgaaga agtacagtgg ctgcctcagc cggctccggt ccgagttcct gaagaagcgg
841 aagaaaggga agctaccaaa ggacgcacgg tcggcactgc ttgaatggtg gaacacacac
901 taccgctggc catatcccac ggaagaagat aagctgaggc ttgcagcgag gacaggtctt
961 gacccaaagc agatcaacaa ttggttcatc aaccagagga agaggcactg gaagccatcg
1021 gacgggatgc ggttcgcgct catggagggc gtggcgggtg gatcgtccgg gacgacgctc
1081 tacttcgaca ctggcacaat tggaccatga attcattttt gagcaatgcc gcctcttgag
1141 aaaattggcc atttaggcag taatagtagg acatggtatt tggtggtgat tgtgtctagc
1201 tatgatcaat ctttcagcag gtcagtgtta ttcagttcag ggtaaagtaa ttgcctcatt
1261 gttttggcag atcatgtgta tatggcatcg taccaaatca aaatgtataa tcgttaggta
1321 atatatatct tggggagacc tgaaaaggct gttattagta gtttcatgta atggctcaac
1381 tcaagggttg tgagtaatct ttgtccacac tgcgtaccca gctggactgt tagataggcc
1441 gaggacttga aaaaggtaag tttacctgta ctaaaatgtt tgcctattat tttgtctata
1501 tttataaatt catttgttcg gacttc
//