LOCUS AK240940 2289 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J065042D15, full insert
sequence.
ACCESSION AK240940
VERSION AK240940.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2289)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2289
/clone="J065042D15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="germinating seeds"
CDS 150..1832
/db_xref="Osa1:LOC_Os11g06930"
/note="(Rice Genome Annotation Project) CBS domain
containing protein, expressed"
/note="mapping to R11-TIGRv4S1-000174R (Chr.11: short
arm=3414538, long arm=3419913, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00915.1"
/translation="MSAAGVALNRRTRSRPPSVASSQKSDDPAAAVAAISTAEATPSP
SHAAGERTVKKLRLTKAVTIPEGTTVAEACQRMAARRVDAVLLTDANGLLSGIVTDKD
IAKRVIAEGLRVEQTITSKIMTRTPVYVMSDTLAIEALQKMVQGKFRHLPVVENGEVI
AMLDIAKCLYDAISRLEKAAEQGSALAAAVEGVERQVGDNLPDHSSVIETLRERMLKP
SLSTIISENTKVAIVSPWDPVCVAARKMHELRVNSVVITAGNSLQGIFTSKDVLMRVV
TQNLSPELTHVEKVMTAHPECATLDTSILDALHIMRDGKFLHIPVVDGEGRVVACLDV
LQITHAAISMVEGGPETTNGVANTIMQKFWDSALALEPPDEEFDSRSEISLLMPSEAG
DGRSSINPPVVGNSFVFKIEDQKGRMHRFACGSESLHELVSSVVQRLGIDGEKGTVQL
LYDDDEGDRVLLTTDTDLTGAVLHAKSSGLKSLRLYTDESNSSSEVTKHSSEVTKHAS
EVTKHTSEVTKQPPELTSSHTSQLTPAHYGLMAGAVVLTGVVVMIYLRRSKV"
BASE COUNT 630 a 501 c 589 g 569 t
ORIGIN
1 ggtggcgtgt gggagcccag tcgaaccggc cacctctccc cccctccaat ttttccggcg
61 gccgccaccg ccgccgacga tccctctctc cgcccactgc caactacatc gctgattccg
121 gagcagcgga ggcggcggcg gacgaagcca tgagtgccgc cggcgtggcg ctgaaccgcc
181 gcacccgcag ccgcccgccg tcggtggcct cctcccagaa gtccgatgat cccgccgccg
241 cggtcgccgc tatctccacc gccgaagcca cgccctcccc cagccacgcc gcaggggaga
301 ggacggtgaa gaagctgcgg ctgacgaagg cggtgacgat cccggagggg acgacggtgg
361 cggaggcttg ccagcggatg gcggcgagga gggtggacgc cgtgctgctc acggacgcca
421 acggattact ctccggcatc gtcaccgata aagacatagc taaaagggtg attgcagagg
481 ggttgcgggt tgagcaaaca atcacctcca agatcatgac acgaactcct gtttatgtca
541 tgtctgacac acttgctatt gaagcactgc agaaaatggt ccaaggaaaa tttaggcacc
601 tcccagtggt ggaaaatggt gaggttattg ccatgctaga cattgcaaaa tgcctctatg
661 atgcaatatc aagactggaa aaggcagcag aacagggaag tgcattagca gctgctgtag
721 aaggggttga gcgtcaagtg ggagacaact tgccagatca ttccagtgta atagaaactc
781 taagagaaag gatgcttaaa ccttcattgt caaccattat ctcggagaac acaaaagtag
841 caattgtttc accatgggat cctgtttgtg tagcagcacg aaaaatgcat gaattacggg
901 ttaactcagt ggttatcact gcaggaaatt cattgcaagg gatttttacc tcaaaggatg
961 tgcttatgcg cgttgtgaca caaaatctct ctcctgagtt aactcatgta gaaaaggtaa
1021 tgactgcaca ccctgaatgt gctacattag acacatcaat tctcgatgct ctgcatatta
1081 tgcgcgatgg caaattcttg catattcctg ttgttgatgg agaagggaga gttgttgctt
1141 gcttggatgt tctgcagatt acccatgcag ccatttcaat ggttgaagga ggtcctgaga
1201 ccacgaatgg tgtggcaaac acaataatgc aaaagttttg ggactcagct cttgctttgg
1261 agcccccaga tgaggaattt gatagtcgca gtgaaatatc tttgctcatg ccatcagagg
1321 ctggagatgg caggagtagc attaatcctc ctgttgttgg caattcattt gtctttaaga
1381 ttgaggacca gaagggacgt atgcatagat ttgcatgtgg ttcagagagt ttacatgagc
1441 tggtgtcttc tgtggtgcaa agattaggca ttgatggcga aaagggcaca gttcaacttt
1501 tgtatgatga tgatgaaggt gatagggtgt tgctcactac ggatactgat cttaccgggg
1561 ctgtgctcca tgctaaatct tctggattga agtcattgag gttgtacact gatgagtcaa
1621 attccagttc tgaggtgaca aaacacagtt ctgaagtaac aaagcacgct tctgaagtga
1681 caaagcacac ttctgaagtg acaaagcaac ctccagagtt gacatcttca cacacaagtc
1741 agttgacccc tgctcattat ggcctgatgg caggtgcagt tgttctaaca ggggttgtgg
1801 tgatgattta cttgagacgc tctaaagtgt gattgtctga gataaatttt ccacacatgg
1861 ctctaattta aaatataaac agcacgattg aacttcttag cttatcaaca gattaagagt
1921 gaagagacag atggacatcg acgataaagt acggcgtaca tggagtcaag gacctaaaag
1981 caatcaactg acagtctcag gttttctcag gaactgagga actgggctgg aagtggaact
2041 aacaaaatat ggtattgctc catttttgtt tttgcatgca gatttttcac agatgtagtg
2101 aaatgcatgt tatgcataat tgctatatga aattatgaat tactggtcac cacgaatcta
2161 gtggattctt ccctgacaga acccaagaag gcaagaaatg atatgaagaa tacaacaatg
2221 tatgatcatt ctttactaat gtgagaaaga attaatatat gcagtataat cattctttat
2281 taatgtgag
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