LOCUS AK240937 1762 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J065041L24, full insert sequence. ACCESSION AK240937 VERSION AK240937.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1762) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1762 /clone="J065041L24" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 86..1492 /db_xref="Osa1:LOC_Os06g12870" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R06-TIGRv4S1-000384R (Chr.6: short arm=7042614, long arm=7044627, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH00912.1" /translation="MVTTNFVQNHHLQNSQFFLLPKRQLVTYALYALIPLALLHYLLF NPVATAKKPVVVVVQATDDASVIASSHHEHVKVNAKQLPVPPSDQGDEGFKKNAIAGE VAAAAACDYSDGEWVPDARPPLYNGTSCATIKDGQNCMAHGRPDTGYLHWRWRPRRCD LPAFSPEAFLGWLRGKHLAFVGDSLARNQAESLVCLLASRSTPELVHRDGEENRFRRW AFREHDATVSIFWSPFLVKAAEKAERAGVRHNNVFLDAFDERWMSGLGGLDAVVLSIG HWFLIPGIYHDAGEVVGCHDCAEFNHTETPFFAVFRQAVHRTLAEITRRHVLAAGAGT SKSKSKVVAFTTFSPAHFEGEWDKAGACNKTRPYKNGEKEAGYTEAEMRKTVVEEVAA ADAAAAGGGGAGLRFAALDVTTLANLRPDGHPGPYMRGDPFAGGGGGARVQNDCVHWC LPGAIDTFNEILLQTITR" BASE COUNT 323 a 554 c 568 g 317 t ORIGIN 1 ggatcccttt cttctcccca tccctctttg ccatggtttc cgcatcttga gctgagcaga 61 gcacagcttg tacctgcagc cagccatggt gaccaccaat ttcgtgcaga accaccacct 121 tcagaacagc cagttcttcc tgctccccaa gaggcagctt gtgacctacg ccctctacgc 181 tctcatccct ctcgccctcc tccattacct tctcttcaac cctgtggcca ctgccaagaa 241 gccggtggtg gtggtggttc aggcgacaga cgatgcttcg gtcatcgcct cgtctcatca 301 cgagcatgtc aaggtgaatg ccaagcagct gcctgtgccc ccttctgacc aaggagatga 361 agggttcaag aagaatgcga tagccggaga agtggcggcg gcggcggcgt gcgactactc 421 cgacggcgag tgggtgccgg acgcgcggcc gcctctctac aacgggacga gctgcgccac 481 gatcaaggat gggcagaact gcatggcgca cggccggccg gacaccggct acctccactg 541 gcggtggcgg ccgcggcggt gcgacctccc ggcgttctcg ccggaggcgt tcctcggctg 601 gctccgcggc aagcacctcg cgttcgtcgg cgactcgctg gcgcgcaacc aggcggagtc 661 gctggtgtgc ctcctggcgt cccgctccac gccggagctc gtgcaccgcg acggcgagga 721 gaacaggttc cggcggtggg cgttccggga gcacgacgcc accgtgtcca tcttctggtc 781 gccgttcctc gtcaaggccg cggagaaggc ggagcgcgcc ggcgtgcggc acaacaacgt 841 gttcctggac gcgttcgacg agcggtggat gtccgggctg gggggcctcg acgccgtcgt 901 gctctccatc gggcactggt tcctgatccc gggcatctac cacgacgccg gcgaggtcgt 961 cggctgccac gactgcgccg agttcaacca caccgagacc cccttcttcg ccgtgttcag 1021 gcaggcggtc caccggacgc tcgccgagat cacccggcgc cacgtcctcg ccgccggcgc 1081 gggcacgagc aagagcaaga gcaaggtggt ggcgttcacg acgttctcgc cggcgcactt 1141 cgagggggag tgggacaagg ccggcgcgtg caacaagacg cggccgtaca agaacggcga 1201 gaaggaggcc gggtacacgg aggcggagat gcgcaagacc gtcgtggaag aggtcgccgc 1261 cgccgacgcc gccgcggccg gcggcggcgg cgcgggcctg cggttcgcgg cgctggacgt 1321 gacgacgctg gccaacctgc ggcccgacgg gcacccgggc ccgtacatgc gcggcgaccc 1381 gttcgccggc ggcggcggcg gcgcgcgggt gcagaacgac tgcgtgcact ggtgcctccc 1441 cggcgccatc gacacgttca acgagattct gctccagacc atcaccagat gacgacgttg 1501 ataagatgaa tcgtttcgtc tcgtttacga gatcatacga gtagatagtg cgaattccgc 1561 ggtaaaaatg gtttggttta gatctcagtg atttttgggt gtcgcctttg atgtagctgt 1621 aattgttaga gcatatacaa tagcaggcta taagtccgtt ataaacataa gtccgttata 1681 aacatatttt aaagagatat atgaaaagat aggagagcag cgggctacag atctgtagcc 1741 agctgcagca tgggaattgg ct //